View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_11 (Length: 365)
Name: NF14861_high_11
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 30495846 - 30495502
Alignment:
| Q |
1 |
cacaaatttctcaaattcatgatagctcacttccttaacatttaagctccttcccttattattatgtgtccctctttcttcagctccagctgctgccaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30495846 |
cacaaatttctcaaattcatgatagctcacttccttaacatttaagctccttcccttattattatgtgtcccaatttcttcagctccagctgctgccaga |
30495747 |
T |
|
| Q |
101 |
attctcagcaccttctcaattcctttgtgtaaattctctttgtctacatctttcatctgatagcttatacgggtaggtgaatccacggttcctgatcctt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||||| |
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| T |
30495746 |
attctcagcaccttctcaattcctttgtgtaaattctctttgtctacatttttcatctgatagcttatacgagtaggtgaatccacagttcctgatcctt |
30495647 |
T |
|
| Q |
201 |
gatcccttgccagtgcaaatacatgagctgttcttgaaaacttgcgcattcgatcttttatatccattccagaactccacggcattagaactgagaataa |
300 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
30495646 |
gatcccttgccagtgcaaatacatgagctgttctagaaaacttgcgcatacgatcttttatatccattccagaactccacggcattagaactgagaacaa |
30495547 |
T |
|
| Q |
301 |
gcctggatgcaatgaaggtgtttggatcaccgcgccataaccagt |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
30495546 |
acctggatgcaatgaaggtgtttggatcaccgcaccatatccagt |
30495502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 5e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 2 - 333
Target Start/End: Original strand, 10449567 - 10449898
Alignment:
| Q |
2 |
acaaatttctcaaattcatgatagctcacttccttaacatttaagctccttcccttattattatgtgtccctctttcttcagctccagctgctgccagaa |
101 |
Q |
| |
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||||||| |||||||||||| || ||| | | ||| ||||||||| | ||||||| |||| ||| || || |||||||||| || ||||| ||||||| |
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| T |
10449567 |
acaaattgctcaaattcatggtaactcgcattctttacatttaaggtatttcccttgttatgatgagttccaatttcttcagcaccggctgcagccagaa |
10449666 |
T |
|
| Q |
102 |
ttctcagcaccttctcaattcctttgtgtaaattctctttgtctacatctttcatctgatagcttatacgggtaggtgaatccacggttcctgatccttg |
201 |
Q |
| |
|
||||||| ||||| |||||||| || ||||||||||||| || ||||||| ||| | ||| |||||||| | || |||| ||| |||| |||||||| |
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| T |
10449667 |
ttctcagtaccttatcaattcccttctgtaaattctcttcatcaacatcttccatttcataacttatacgacttggcgaatgcacatttcccgatccttg |
10449766 |
T |
|
| Q |
202 |
atcccttgccagtgcaaatacatgagctgttcttgaaaacttgcgcattcgatcttttatatccattccagaactccacggcattagaactgagaataag |
301 |
Q |
| |
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||||||||| | |||||||| |||||| || ||||||||||| ||||||| ||| |||||||| |||||||| ||||||||| | || |||||| |
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| T |
10449767 |
atcccttgctaatgcaaatatatgagcagtccttgaaaactttcgcattctatcctttatatcgcttccagaaacccacggcatgacaatcgagaatgta |
10449866 |
T |
|
| Q |
302 |
cctggatgcaatgaaggtgtttggatcaccgc |
333 |
Q |
| |
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|| |||||||||| |||||||||||||||||| |
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|
| T |
10449867 |
ccaggatgcaatgcaggtgtttggatcaccgc |
10449898 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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