View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_17 (Length: 310)
Name: NF14861_high_17
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 184; Significance: 1e-99; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 8309206 - 8309393
Alignment:
| Q |
1 |
ccaccagactcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaataacaaagt |
100 |
Q |
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| T |
8309206 |
ccaccagactcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaataacaaagt |
8309305 |
T |
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| Q |
101 |
tacctttttcatattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
188 |
Q |
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| T |
8309306 |
tacctttttcatattatatagtacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
8309393 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 8299744 - 8299916
Alignment:
| Q |
10 |
tcaatgatgctaatttatatctatcttcctgcaaatgaaagaaaacggaagcaaattaatatataatcaatatgaatattaataacaaagttaccttttt |
109 |
Q |
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| T |
8299744 |
tcaatgatgctgatctatatctatctacctgcaaatgaaagacaacggaaggaaaacaatacataatcagtatcaatattaa------agttaccatttt |
8299837 |
T |
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| Q |
110 |
catattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaagtaatatctatacaagacatatg |
188 |
Q |
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| T |
8299838 |
catattatatagtacattcaattctaatcctagataactacctaaaaaccattcaaataatatctatacaaggcatatg |
8299916 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 251 - 310
Target Start/End: Original strand, 8309456 - 8309515
Alignment:
| Q |
251 |
ctaacctaagtctgaaggagctgcactacacattcgcattgttttagtcatattttcagt |
310 |
Q |
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| T |
8309456 |
ctaacctaaggctgaaggagctgcactacacattcatattgttttagtcatattttcagt |
8309515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 263 - 310
Target Start/End: Original strand, 8299963 - 8300010
Alignment:
| Q |
263 |
tgaaggagctgcactacacattcgcattgttttagtcatattttcagt |
310 |
Q |
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| T |
8299963 |
tgaaggagctgcactacacattcatattgttttagtcatattttcagt |
8300010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 84 - 165
Target Start/End: Complemental strand, 21120857 - 21120778
Alignment:
| Q |
84 |
aatattaataacaaagttacctttttcatattatatactacaatcaatcctggtcctagatagctacataaaaaccattcaa |
165 |
Q |
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| T |
21120857 |
aatattaataacaaagttaccattttcatat--tatagtagaatcaatcctaattctagatagctgcataaaaacccttcaa |
21120778 |
T |
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