View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_2 (Length: 548)
Name: NF14861_high_2
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 225; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 297 - 533
Target Start/End: Original strand, 27217672 - 27217908
Alignment:
| Q |
297 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagaggtggacca |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
27217672 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgcggagattctgttcggattctttagaggtggacca |
27217771 |
T |
|
| Q |
397 |
aataatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
496 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27217772 |
aataatgagctgcaccagtcaagatgatagcatgattttcgagttgatatctaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
27217871 |
T |
|
| Q |
497 |
aatacaatacattgagtacaagatactcccccctttg |
533 |
Q |
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| T |
27217872 |
aatacaatacattgagtacaagatactcccccctttg |
27217908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 233
Target Start/End: Original strand, 27217395 - 27217608
Alignment:
| Q |
20 |
ttccaactcttcagcttgcaaataatcttccctcgctcgttcttcagcttcattctgaaaatcaatcaacacatccttatcattatcctaaagcgcacat |
119 |
Q |
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|||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
27217395 |
ttccaactcttcagctcgcaaacaatcctccctcgctcgttcttcagcttcattctgaaaatcaatcaacacatccttatcattatcataaagcgcacat |
27217494 |
T |
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| Q |
120 |
tccttttccaaattcgataatgtcccaatagattctcagactctgccgccaatttcagattctcttctacgaacttcattatctctaatgcactcacaca |
219 |
Q |
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| T |
27217495 |
tccttttccaaattcgataatgtcccaatagattctcagactctgccgccaatttcagattctcttcaacgaactttattatctctaatgcactcacaca |
27217594 |
T |
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| Q |
220 |
cttttcatactatt |
233 |
Q |
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||| |||||||||| |
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| T |
27217595 |
cttatcatactatt |
27217608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 297 - 506
Target Start/End: Original strand, 27201886 - 27202094
Alignment:
| Q |
297 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagaggtggacca |
396 |
Q |
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||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||| |||||||||||| | | ||| |
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| T |
27201886 |
ccttagattgttcgatgagttcgtctttttcctttagatttttgaggagtgaagtgttctgatcgcagagattct-ttcggattcttttatagcgcaccg |
27201984 |
T |
|
| Q |
397 |
aataatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtctttgttgcagaacagttgggcta |
496 |
Q |
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|||||||||||| | ||||||||| || || || |||| ||| ||| |||||||||||||| || |||||||||||||| ||||||| |||||| | | |
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| T |
27201985 |
aataatgagctgtagcagtcaagaagaaagcttgctttttgagatgacatcaaaagatattctatattgttgaagtctttattgcagattagttggacca |
27202084 |
T |
|
| Q |
497 |
aatacaatac |
506 |
Q |
| |
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|||||||||| |
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| T |
27202085 |
aatacaatac |
27202094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 19 - 232
Target Start/End: Original strand, 27239938 - 27240152
Alignment:
| Q |
19 |
gttccaactcttcagcttgcaaataatcttccctcgctcgttcttcagcttcattctgaaaatcaatcaacacatccttatcattatcctaaagcgcaca |
118 |
Q |
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||||||| || |||||| ||||| | | |||||||||||||||||||||||||||||||||||||||||| | || |||||||||| || | |||||| |
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| T |
27239938 |
gttccaattcctcagctcgcaaacacgcctccctcgctcgttcttcagcttcattctgaaaatcaatcaacgcttctctatcattatcatacaacgcaca |
27240037 |
T |
|
| Q |
119 |
ttccttttcca-aattcgataatgtcccaatagattctcagactctgccgccaatttcagattctcttctacgaacttcattatctctaatgcactcaca |
217 |
Q |
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|||||| |||| ||| | |||| ||||| ||||||||| |||| |||||||||||| ||||||| || || |||||| ||||| | || ||| ||||| |
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| T |
27240038 |
ttccttctccagttttctacaatgccccaacagattctcacactccgccgccaatttctgattctcctcaacaaacttctttatcgccaacgcattcaca |
27240137 |
T |
|
| Q |
218 |
cacttttcatactat |
232 |
Q |
| |
|
||| |||||||||| |
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| T |
27240138 |
cacgcttcatactat |
27240152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 297 - 389
Target Start/End: Original strand, 27240239 - 27240331
Alignment:
| Q |
297 |
ccttagattgttcgatgagtttgtctttttcctttagttttttgaggagtgaagtgttctgatcgtggagattctgttcggattctttagagg |
389 |
Q |
| |
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|||| |||||||| ||||||| |||| |||| |||||||||| ||||||||||||||||||||| ||||||| |||||||||||||| |||| |
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| T |
27240239 |
ccttggattgttcaatgagttcgtctctttcttttagtttttgaaggagtgaagtgttctgatcgcggagattttgttcggattctttggagg |
27240331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 399 - 476
Target Start/End: Original strand, 37578694 - 37578771
Alignment:
| Q |
399 |
taatgagctgcaccagtcaagatgatggcatgattttcgagttgatatcaaaagatattccattttgttgaagtcttt |
476 |
Q |
| |
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||||||||||||| |||||||| ||| || || |||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
37578694 |
taatgagctgcacaagtcaagaagatagcttgcttttcgagatgacatcaaaagatattccattttgttgaagtcttt |
37578771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 445 - 504
Target Start/End: Complemental strand, 4276462 - 4276403
Alignment:
| Q |
445 |
atcaaaagatattccattttgttgaagtctttgttgcagaacagttgggctaaatacaat |
504 |
Q |
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|||||||||||| ||||||||||||||||||| ||| ||| |||| || | ||||||||| |
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| T |
4276462 |
atcaaaagatatgccattttgttgaagtctttcttgaagatcagtcggaccaaatacaat |
4276403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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