View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_28 (Length: 213)
Name: NF14861_high_28
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_28 |
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Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 5 - 198
Target Start/End: Complemental strand, 50602827 - 50602636
Alignment:
| Q |
5 |
tcaagtctaggcttaaccatgtgtccaaaaccctccagaaaatgtgtggcaccagccagtcgtaggcagggtaagacctccaagacaacaagtgttggat |
104 |
Q |
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| T |
50602827 |
tcaagtctagtcttaattatgtgtccaaaaccctccagaaaatgtgtgccaccagccagtcgtaggcagggtaagacctccaagacaacaagtgttggat |
50602728 |
T |
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| Q |
105 |
cccaacctcatagccaaatttttatatacaatcgaaactcatagacaaaactatgtataagaagtcgtatccaaaatggggttgttagattggt |
198 |
Q |
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| T |
50602727 |
cccaacctcatagccaaatttttatatacaatcgaaactc--agacaaaactatgtataagaagtcgtatccaaaatggggttgttagattggt |
50602636 |
T |
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Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 34184588 - 34184632
Alignment:
| Q |
77 |
aagacctccaagacaacaagtgttggatcccaacctcatagccaa |
121 |
Q |
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| T |
34184588 |
aagacctccaagacaacaactattggatcccaacctcatagccaa |
34184632 |
T |
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