View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_4 (Length: 462)
Name: NF14861_high_4
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 423; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Complemental strand, 38422660 - 38422214
Alignment:
| Q |
1 |
ataaatatattatttctcaagcaaatttgatcttccaatgaaccagaggatattttacgtgtccaagatccctattgttgctcctcttcctcgatggcta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38422660 |
ataaatatattatttctcaagcaaatttgatcttccaatgaaccagaggatattttacgtgtccaagatccctattgttgctcctcttcctcgatggcta |
38422561 |
T |
|
| Q |
101 |
cacacttagctagaacgatattaggagaataaaaatagcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38422560 |
cacacttagctagaacgatattaggagaataaaaatagcttggttgttagtaagtaattccatcacaactccactataaaagatggatttgactcactct |
38422461 |
T |
|
| Q |
201 |
aatatgaacaactcactttaaagagtaacgtgagtaatatcaattatcgataaacaaattaataattgaattttgaaatataccatgagtttactttcga |
300 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
38422460 |
aatgtgaacaactcactttaaagagtaacgtgagtaatatcaattatcgataaaaaaattaataattaaattttgaaatataccatgagtttactttcga |
38422361 |
T |
|
| Q |
301 |
ttcattgacaatctacgatgactttgcacagatgtccgatcagatctcatcatttaaatatattataatcttactagtggatgacatatgatgcattgac |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38422360 |
tacattgacaatctacgatgactttgcacagatgtccgatcagatcttatcatttaaatatattataatcttactagtggatgacatatgatgcattgac |
38422261 |
T |
|
| Q |
401 |
atgttgtattaaatcaatgaagatggtataaataaccactaataagt |
447 |
Q |
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| T |
38422260 |
atgttgtattaaatcaatgaagatggtataaataaccactaaaaagt |
38422214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 389 - 424
Target Start/End: Complemental strand, 38415147 - 38415112
Alignment:
| Q |
389 |
tgatgcattgacatgttgtattaaatcaatgaagat |
424 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||| |
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| T |
38415147 |
tgatgcattgacatgttctattaaatcaatgaagat |
38415112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 205 - 263
Target Start/End: Complemental strand, 14314472 - 14314414
Alignment:
| Q |
205 |
tgaacaactcactttaaagagtaacgtgagtaatatcaattatcgataaacaaattaat |
263 |
Q |
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|||||||||||||| ||||| ||| |||||| ||||||| ||||||| |||| |||||| |
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| T |
14314472 |
tgaacaactcacttcaaagaataaagtgagtgatatcaactatcgatgaacatattaat |
14314414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 243
Target Start/End: Original strand, 43034330 - 43034367
Alignment:
| Q |
206 |
gaacaactcactttaaagagtaacgtgagtaatatcaa |
243 |
Q |
| |
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|||||| |||||||||||||||| |||||||||||||| |
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| T |
43034330 |
gaacaattcactttaaagagtaaagtgagtaatatcaa |
43034367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 205 - 245
Target Start/End: Original strand, 52849416 - 52849456
Alignment:
| Q |
205 |
tgaacaactcactttaaagagtaacgtgagtaatatcaatt |
245 |
Q |
| |
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|||||||||||||||| | ||||| |||||||||||||||| |
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|
| T |
52849416 |
tgaacaactcactttagaaagtaaagtgagtaatatcaatt |
52849456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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