View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_5 (Length: 453)
Name: NF14861_high_5
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 10 - 213
Target Start/End: Original strand, 5639119 - 5639322
Alignment:
| Q |
10 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgctaa |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
5639119 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaagtgctaa |
5639218 |
T |
|
| Q |
110 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaacattgtgtgctatgttaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639219 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaacattgtgtgctatgttaa |
5639318 |
T |
|
| Q |
210 |
acat |
213 |
Q |
| |
|
|||| |
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|
| T |
5639319 |
acat |
5639322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 275 - 436
Target Start/End: Original strand, 5639318 - 5639479
Alignment:
| Q |
275 |
aacatctttagtctttgtacatttagcaacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaagttctgactaatcccttcggagt |
374 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
5639318 |
aacatctttagtctttgtacatttagcaacctttcttaaacaattgttagaccaataagaaatatcacacctaaaaagttctgactaatcccttcggagt |
5639417 |
T |
|
| Q |
375 |
tattgagcagttgttgtgcaattttgtaataaatgtagaagttaaagtcatgttgtgcaatt |
436 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5639418 |
tattgagcagttgttgtgcaattttgtaataaatgtagaagttaaagtcatgttgtgcaatt |
5639479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 6e-72; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 10 - 357
Target Start/End: Original strand, 31938859 - 31939206
Alignment:
| Q |
10 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgctaa |
109 |
Q |
| |
|
||||||||||||||||| |||||| | |||| ||||||||||| ||||||||||||||| ||||||||||| |||| ||||| ||||| |||||||||| |
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| T |
31938859 |
catcatcatcaactacatctaaagaatgggctagacaacttgggtacttaaaggggagaattgtcaaaggactgtcatcagagagtcctagaattgctaa |
31938958 |
T |
|
| Q |
110 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaac-attgtgtgctatgtta |
208 |
Q |
| |
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||| ||||||||||| |||||||| |||||||||||||||| || ||||||||||| || |||||||||||||||| ||||| |||| ||| ||| || |
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|
| T |
31938959 |
acctaatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgaatatacctgcattaaagatggaaactattgagtgtcatgcta |
31939058 |
T |
|
| Q |
209 |
aacataataatgggggaaaatattataacgaaagatgaaaacatgac-caaacttaactcaaactataacatctttagtctttgtacatttagcaacctt |
307 |
Q |
| |
|
|||||||||||| |||| ||||||| ||||||| | || ||| | | |||| | ||||||||||||| |||||||| || |||||||||||| ||| |
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| T |
31939059 |
tacataataatggaaaaaaaaattataatgaaagat-agaatatgtcactaactaatctcaaactataactactttagtc-ttctacatttagcaatctt |
31939156 |
T |
|
| Q |
308 |
tcttaaaaaattgttagatcaataagaaatattacacctaaaaagttctg |
357 |
Q |
| |
|
||| | | ||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
31939157 |
tctaaccatattgttagaccaataagaaatattacacctaaaaagttctg |
31939206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 13535497 - 13535667
Alignment:
| Q |
10 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgctaa |
109 |
Q |
| |
|
|||||||||||||| | |||||| | |||||||||||||||| |||||||| ||||||||||||||||| ||||| |||| ||||| |||| || || |
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| T |
13535497 |
catcatcatcaactgtatctaaagaaggggcaagacaacttgggtacttaaatgggagagttgtcaaaggcttgtcatcagaaagtcctagaatagccaa |
13535596 |
T |
|
| Q |
110 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcatt |
180 |
Q |
| |
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||| ||||||||||| |||||||| | || |||||||| ||||||||||||||||| | |||||||||| |
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| T |
13535597 |
acctaatgtgtatccaagggcaagggctaccggaacagcgaccgcatttccaacttgagtatacctgcatt |
13535667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 13 - 418
Target Start/End: Original strand, 9389215 - 9389621
Alignment:
| Q |
13 |
catcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgctaaacc |
112 |
Q |
| |
|
|||||||||||||| |||||| |||||| ||||||||||| ||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||||||| |
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|
| T |
9389215 |
catcatcaactacatctaaagaacgggccagacaacttgggtacttaaaggggagagttgtcaaaggactgtcatcagagagtcctagaattgctaaacc |
9389314 |
T |
|
| Q |
113 |
caatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctgcattaaagattgaaac-attgtgtgctatgttaaac |
211 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||||| || ||||||||||| |||||||||||||||||| |||||| |||| |||| ||| | || |
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|
| T |
9389315 |
taatgtgtatccaagggcaagggccacaggaacagcaactgcgtttccaacttgcatgtacctgcattaaaga-tgaaactattgagtgccatgcaatac |
9389413 |
T |
|
| Q |
212 |
ataataatgg---gggaaaatattataacgaaagat-gaaaacatgaccaaacttaactcaaactataacatctttagtctttgtacatttagcaacctt |
307 |
Q |
| |
|
|||||||||| | |||| | ||||| ||||||| ||||| | | | |||| | ||| | |||||| ||||||| || |||||||||||| ||| |
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|
| T |
9389414 |
ataataatgggaagaaaaaaaaatataatgaaagatagaaaatgtta-ctaactaatctc-acttataactagtttagtc-ttctacatttagcaatctt |
9389510 |
T |
|
| Q |
308 |
tcttaaaaaattgttagatcaataagaaatattacacctaaaaagttctg-actaatcccttcg--gagttattgagcagttgttgtgcaattttgtaat |
404 |
Q |
| |
|
||| | | | ||||||| ||||||||||||||||||||||||||||||| ||| ||||||| | |||||||||| || |||||||||||| ||||| |
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|
| T |
9389511 |
tctaaccataatgttagaccaataagaaatattacacctaaaaagttctgaactgatcccttaggagagttattgaaca---gttgtgcaatttagtaat |
9389607 |
T |
|
| Q |
405 |
aaatgtagaagtta |
418 |
Q |
| |
|
|||| | ||||||| |
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|
| T |
9389608 |
aaatatggaagtta |
9389621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 175
Target Start/End: Complemental strand, 19810254 - 19810089
Alignment:
| Q |
11 |
atcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaat-tgctaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| | ||| |||||||| ||||||| ||||| | ||||| || || |||||||||| ||||| |
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|
| T |
19810254 |
atcatcatcaactacagctaaaggacgggctagacagcatggctacttaaacaggagagtcgtcaacgacttgtcgtcaaagagtccttgaataggctaa |
19810155 |
T |
|
| Q |
110 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacct |
175 |
Q |
| |
|
|| ||||||| ||||||| |||| ||| ||||||| ||||||||||||||||| |||||||| |
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|
| T |
19810154 |
tcctaatgtgtgtccgaggtcaagggccattggaacagtaaccgcatttccaacttacatgtacct |
19810089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 98; Significance: 4e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 10 - 419
Target Start/End: Original strand, 1337028 - 1337444
Alignment:
| Q |
10 |
catcatcatcaactacagctaaaggacgggcaagacaacttggatacttaaaggggagagttgtcaaaggattgtccccagagcgtccttgaattgctaa |
109 |
Q |
| |
|
||||||||| ||||||| ||||||||||||| |||||||| || ||||||||||||||||||||||||||| ||| | ||| ||||| ||||||| || |
|
|
| T |
1337028 |
catcatcattaactacatctaaaggacgggctagacaactagggtacttaaaggggagagttgtcaaaggaccgtcatcggagtgtcctagaattgccaa |
1337127 |
T |
|
| Q |
110 |
acccaatgtgtatccgagggcaagacccacaggaacagcaaccgcatttccaacttgtatgtacctg--cattaaagattgaaacattgtgtgctatgtt |
207 |
Q |
| |
|
||| ||||||||||| |||||||| | |||||||||||||| || ||||||||||| ||||||||| |||||||||| ||| |||| |||| ||| | |
|
|
| T |
1337128 |
acctaatgtgtatccaagggcaagggcaacaggaacagcaactgcgtttccaacttgcatgtacctgcacattaaagatggaactattgagtgccatgct |
1337227 |
T |
|
| Q |
208 |
aaacataataatgg------gggaaaatattataacgaaagat-gaaaacatgaccaaacttaactcaaactataacatctttagtctttgtacatttag |
300 |
Q |
| |
|
| |||||||||||| | |||| ||||| |||||| ||||| | | | ||| ||||||||||||||| |||||||| || ||||||||| |
|
|
| T |
1337228 |
atacataataatggaaagaagacaaaaagttata--caaagatagaaaatgtta-ctgactaaactcaaactataactactttagtc-ttctacatttag |
1337323 |
T |
|
| Q |
301 |
caacctttcttaaaaaattgttagatcaataagaaatattacacctaaaaagttct-gactaatcccttcg--gagttattgagcagttgttgtgcaatt |
397 |
Q |
| |
|
||| |||||| | | ||| |||| ||||||||||||||||||||||||| |||| |||| |||||| | ||||||||||||| ||||||||||||| |
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|
| T |
1337324 |
caatctttctaaccatattattagtccaataagaaatattacacctaaaaa-ttctggactgatccctaagaagagttattgagcaattgttgtgcaatt |
1337422 |
T |
|
| Q |
398 |
ttgtaataaatgtagaagttaa |
419 |
Q |
| |
|
| ||||||||| | |||||||| |
|
|
| T |
1337423 |
tagtaataaatatggaagttaa |
1337444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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