View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14861_high_6 (Length: 449)
Name: NF14861_high_6
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 37942290 - 37942721
Alignment:
| Q |
1 |
cattagagtctaaaggagtcggtaggactaaaatctaattaacaatgtttagtggcaagt--tccatcaagaagttctcatcccattccccaaaggaatt |
98 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
37942290 |
cattagagtctgaaggagtcggtaggactaaagtctaattaacaatgtttagtggcaagtcatccatcaagaagttctcatcccattggggaaaggaatt |
37942389 |
T |
|
| Q |
99 |
caaagcatgtgtcgacatacgtttgattgactaaatagaagatagaagtgtttttcgggg-cccatttctccaacaaaacattagtacatctcctatcca |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37942390 |
caaagcatgtgtcgacatacgtttgattgactaaatagaagatagaagtgtttttcggggccccatttctccaacaaaacattagtacatctcctatcca |
37942489 |
T |
|
| Q |
198 |
caagattttgagctgatagtgatattaagnnnnnnnnnnaagaatgcaactaacatatcgaaattgacaccggagaaaatcgaatttaaaacctcaagaa |
297 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37942490 |
caagattttgagctgatagtgatattaag--ttttttttaagaatgcaactaacatattgaaattgacaccggagaaaatcgaatttaaaacctcaagaa |
37942587 |
T |
|
| Q |
298 |
aaacatattcaaaggtttcaagtcaacaccgcgatgagtttctcttaatggtatttgttccaatgaactctataccaaaacttatcttatttttaaataa |
397 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37942588 |
aaacatattcaaaggtttcaagtcaacaccgcgatgagtttctcttaatggcatttattccaatgaactctataccaaaacttatcttatttttaaataa |
37942687 |
T |
|
| Q |
398 |
gattccacaacactttcattaggaaagacccatt |
431 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
37942688 |
gattccacaacactttcattaggaaagacccatt |
37942721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 248 - 284
Target Start/End: Complemental strand, 40075744 - 40075708
Alignment:
| Q |
248 |
taacatatcgaaattgacaccggagaaaatcgaattt |
284 |
Q |
| |
|
|||||||||||||||||||||| ||| |||||||||| |
|
|
| T |
40075744 |
taacatatcgaaattgacaccgaagataatcgaattt |
40075708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University