View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_high_9 (Length: 389)
Name: NF14861_high_9
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 365
Target Start/End: Original strand, 11012127 - 11012476
Alignment:
| Q |
18 |
ttttttaatatcaataattaaatgatatttttgtaataaactaacannnnnnnnnaaatttaattgagatatgacctacactatatgaatgcttttatga |
117 |
Q |
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| T |
11012127 |
ttttttaatatcaataattaaatgatatttttgtaataaactaacatttttttttaaatttaattgagatatgacccacactatatgaatgcttttatga |
11012226 |
T |
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| Q |
118 |
gttaagattcaaacattgatttacaatattgagaagtgtaactccttccgttaaatttaacatccgatgtttgtaaatttttctacttatcagtattatt |
217 |
Q |
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| T |
11012227 |
gttaagattcaaacattgattcacaatactgagaagtgtaactccttccgttagatttaacatccgatgtttgtaaatttttctacttatcagtattatt |
11012326 |
T |
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| Q |
218 |
tcatggtcatttttccggttctagttattttaagaggattccatggtcctagttaattatttttgttata-nnnnnnnataaaacacatttaacattccc |
316 |
Q |
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| T |
11012327 |
tcatggtcatttttccggttctagttattttaagaggattccatggtcctagttaattatttttgttatattttttttataaaaaacatttaacattccc |
11012426 |
T |
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| Q |
317 |
taacac-nnnnnnnnaatggaaaatgttactatgataattgctatattag |
365 |
Q |
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| T |
11012427 |
taacacattttttttaatggaaaatgttagtatgataattgctatattag |
11012476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 284
Target Start/End: Original strand, 11002474 - 11002620
Alignment:
| Q |
142 |
aatattgagaagtgtaactccttccgttaaatttaacatccgatgtttgtaaatttttctactt--atcagtattatttcatggtcatttttccggttct |
239 |
Q |
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| T |
11002474 |
aatattgaagagtgtaactccttccgctacatttaacatccatcgagtgtacatttttgtattttaagaagtattatttcatggtcatttttcctgtttt |
11002573 |
T |
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| Q |
240 |
ag--ttattttaagaggattccatggtcctagttaattatttttgtt |
284 |
Q |
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| T |
11002574 |
agatttttttttagaggatttcatggttcttgttaattatttttgtt |
11002620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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