View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_1 (Length: 793)
Name: NF14861_low_1
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 399 - 779
Target Start/End: Complemental strand, 14598862 - 14598482
Alignment:
| Q |
399 |
acagggctcttattgctattcgcttagtagtgatgtgcttctttttacattggagagtgaccaatccaaatgaagatgcaatatggttatggctcatgtc |
498 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14598862 |
acagggctcttattgctattcgcttggtagtgatgtgcttctttttacattggagagtgaccaatccaaatgaagatgcaatatggttatggctcatgtc |
14598763 |
T |
|
| Q |
499 |
aattacctgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgcagcactgaccttgccgtcctttatgag |
598 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
14598762 |
aattacttgtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgtagcactgaccttgccgtcctttatgag |
14598663 |
T |
|
| Q |
599 |
aaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctc |
698 |
Q |
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| T |
14598662 |
aaatttgatgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctc |
14598563 |
T |
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| Q |
699 |
ttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
779 |
Q |
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| T |
14598562 |
ttgtaactgccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
14598482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 407 - 779
Target Start/End: Original strand, 14609622 - 14609994
Alignment:
| Q |
407 |
cttattgctattcgcttagtagtgatgtgcttctttttacattggagagtgaccaatccaaatgaagatgcaatatggttatggctcatgtcaattacct |
506 |
Q |
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| T |
14609622 |
cttattggtgttcgcttagtagtaatgtgcttctttttacattggagagtgacacatccaaataaagaggcagtatggttgtgggttatgtcaattactt |
14609721 |
T |
|
| Q |
507 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagatttcaccggttaaccgcagcactgaccttgccgtcctttatgagaaatttga |
606 |
Q |
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| T |
14609722 |
gtgagatatggttcggcttttcatggatacttgaccaaattccaaagctttctccagttaatcgtagcactgacctagacgtccttcatgagaaattcca |
14609821 |
T |
|
| Q |
607 |
tgctccatccccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaact |
706 |
Q |
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| | | |||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| || |||||||||||||||||| |
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| T |
14609822 |
cgttgtaaccccgacaaatcccacagcaagatctgatctgcctggttgtgacctctttgtgtcgacggctgatcctgataaagagccgcctcttgtaact |
14609921 |
T |
|
| Q |
707 |
gccaataccattctttccatattagcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
779 |
Q |
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| T |
14609922 |
gccaataccattctttccatattagcagttgattatccagtggagaagctcgcttgttatgtttcagatgatg |
14609994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 14599242 - 14599032
Alignment:
| Q |
19 |
caaacggttcccaaagaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctcc |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14599242 |
caaacggttccaaaagaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctcc |
14599143 |
T |
|
| Q |
119 |
agatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaaccctggaagcctttgtgtagaagaacaccaattccaaatggc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14599142 |
agatgattcagatgatgaggctggtctaaatgaaggagtatttgatggttccgagaaaccttggaagcctttgtgtagaagaacaccaattccaaatggc |
14599043 |
T |
|
| Q |
219 |
atcataactcc |
229 |
Q |
| |
|
||||||||||| |
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| T |
14599042 |
atcataactcc |
14599032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 33 - 225
Target Start/End: Original strand, 14609286 - 14609478
Alignment:
| Q |
33 |
agaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggcctccagatgattcagatg |
132 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| | ||| |
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| T |
14609286 |
agaaatcaaaatggagaatttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcatattggcctccagacgatgaaaatg |
14609385 |
T |
|
| Q |
133 |
atgaggctggtctaaatgaaggagtatttgatggttccgagaaaccctggaagcctttgtgtagaagaacaccaattccaaatggcatcataa |
225 |
Q |
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| | |||| | || |||||||||||||| ||| ||||| || |||||||||||||| ||| || | || |||||||||||||||||| |
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| T |
14609386 |
gaggtgatggtatgcatcaaggagtatttgattcttctgagaagccttggaagcctttgtgccgaaaaagatcagttccaaatggcatcataa |
14609478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 617 - 768
Target Start/End: Complemental strand, 12194952 - 12194801
Alignment:
| Q |
617 |
ccagaaaatcccacagggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaatacca |
716 |
Q |
| |
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|||| |||||| ||||||| ||||||||| || || ||| | |||||||||||||| ||||| ||||| ||||| || ||||| || || ||||||| |
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| T |
12194952 |
ccagcaaatccaacagggaaatctgatctcccgggaattgatatgtttgtgtcaactgccgatccagaaaaagagccaccccttgttaccgcaaatacca |
12194853 |
T |
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| Q |
717 |
ttctttccatattagcagttgattaccctgtggagaaactcgcttgttatgt |
768 |
Q |
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||||||| || ||||||||||||||||||| || |||||||| |||||||| |
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| T |
12194852 |
ttctttcaattctagcagttgattaccctgttgataaactcgcatgttatgt |
12194801 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 631 - 779
Target Start/End: Original strand, 44632884 - 44633032
Alignment:
| Q |
631 |
agggagatctgatctgcctggttgtgacctctttgtgtcaactgctgatcctgaaaaggagccgcctcttgtaactgccaataccattctttccatatta |
730 |
Q |
| |
|
|||||| |||||||| ||||| ||| ||||||| |||||||| ||||| ||||| ||||| |||||||||||||| || |||||| | || || | |
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| T |
44632884 |
agggaggtctgatctccctggaattgatgtctttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccattttatctatcctt |
44632983 |
T |
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| Q |
731 |
gcagttgattaccctgtggagaaactcgcttgttatgtttcagatgatg |
779 |
Q |
| |
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||||||||||| |||||||| ||| | ||||||||| | || ||||||| |
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| T |
44632984 |
gcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatg |
44633032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 15420619 - 15420556
Alignment:
| Q |
51 |
tttgatcacaataaatggttgtttgagaccaaaggtacctatggagttggcaatgcttattggc |
114 |
Q |
| |
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|||||||| |||| ||||||||||||||| ||||| ||||||||| |||| ||||||| ||||| |
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| T |
15420619 |
tttgatcataatagatggttgtttgagactaaaggaacctatggaattggaaatgctttttggc |
15420556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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