View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_13 (Length: 347)
Name: NF14861_low_13
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 17 - 329
Target Start/End: Complemental strand, 35313990 - 35313677
Alignment:
| Q |
17 |
caaaggttacaaaagaaaacaaccatactgcatatcctcatgcatt-atttgctatattagtcaaattttcttagactcaactcaacatgaggcaaactt |
115 |
Q |
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| T |
35313990 |
caaaggttacaaaagaaaacaaccatactgcatatcctcatgcatttatttgctatattagtcaaattttcttagactcaactcaacatgaggcaaactt |
35313891 |
T |
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| Q |
116 |
aaggaaatcacgtgtccaacgttcaagcacaattaactattgttgtaccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctt |
215 |
Q |
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| T |
35313890 |
aaggaaatcacgtgttcaacgttcaagcacaattaactattgttgtaccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctt |
35313791 |
T |
|
| Q |
216 |
tggtgagaacttccaaagaaattggtggtttagatccaaacacagcatttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaat |
315 |
Q |
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| T |
35313790 |
tggtgagaacttccaaagaaattggtggtttagatccaaacacagcatttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaat |
35313691 |
T |
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| Q |
316 |
agcctccccataac |
329 |
Q |
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|||||||||||||| |
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| T |
35313690 |
agcctccccataac |
35313677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 314
Target Start/End: Complemental strand, 713155 - 713004
Alignment:
| Q |
163 |
ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca |
262 |
Q |
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| T |
713155 |
ccagaattgtttttgaagattatccactatattattgtcaacttgaaaagctttggtgagaacttctgaagaaatttttggattagatccaaatacagca |
713056 |
T |
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| Q |
263 |
tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaa |
314 |
Q |
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| T |
713055 |
ttagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaa |
713004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 717585 - 717736
Alignment:
| Q |
163 |
ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca |
262 |
Q |
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| T |
717585 |
ccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagca |
717684 |
T |
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| Q |
263 |
tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaa |
314 |
Q |
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| T |
717685 |
ttagcaattgtgattacaccaggattttggctgctaagtccagcaatagcaa |
717736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 314
Target Start/End: Original strand, 702283 - 702434
Alignment:
| Q |
163 |
ccagaattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagca |
262 |
Q |
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| T |
702283 |
ccagaattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagca |
702382 |
T |
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| Q |
263 |
tttgcaatggtaatcactccagggttttggctactaagaccagcaatggcaa |
314 |
Q |
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| T |
702383 |
ttagcaattgtgattacacctggattttggctgctaagtccagcaatagcaa |
702434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 167 - 314
Target Start/End: Original strand, 710556 - 710703
Alignment:
| Q |
167 |
aattgcttttgaagatagtcgattacatttttatccacttgaaaggctttggtgagaacttccaaagaaattggtggtttagatccaaacacagcatttg |
266 |
Q |
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||||| |||||||||| ||| | || ||| || || |||||||| ||||||||||||||||| |||| ||| ||| ||||||||||| |||||||| | |
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| T |
710556 |
aattgtttttgaagattgtccactatattattgtcaacttgaaaagctttggtgagaacttctgaagagatttttggattagatccaaatacagcattag |
710655 |
T |
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| Q |
267 |
caatggtaatcactccagggttttggctactaagaccagcaatggcaa |
314 |
Q |
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|||| || || || ||||| |||||||| ||||| |||||||| |||| |
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| T |
710656 |
caattgtgattacaccaggattttggctgctaagtccagcaatagcaa |
710703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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