View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_15 (Length: 332)
Name: NF14861_low_15
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_15 |
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| [»] scaffold0685 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 20 - 317
Target Start/End: Original strand, 29549488 - 29549785
Alignment:
| Q |
20 |
taatgtgccccttttccattcactagacaattattgatcaaaaattaatgtggattttagttgttataataatgctcatttaaagttacatatttcagat |
119 |
Q |
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| T |
29549488 |
taatgtgccccttttccattcactagacaattattgatcaaaaattaatgttgattttagttgttataataatgctaatgtaaagttacatatttcagat |
29549587 |
T |
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| Q |
120 |
gtggtatcaatttgcaaagacttcagctgaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccagcagtggcatta |
219 |
Q |
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| T |
29549588 |
gtggtatcaatttgcaaagacttcagctgaggaagctgcaacaaaatttctaacagaaaacaacatcgaccacgttgttatgaatccagcagtggcatta |
29549687 |
T |
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| Q |
220 |
gggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggtactaacttctatttgctactgaaattttttccaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29549688 |
gggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggtactaacttctatttgctactgaaattttttccaat |
29549785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 29556116 - 29556290
Alignment:
| Q |
109 |
atatttcagatgtggtatcaatttgcaaagacttcagctgaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccag |
208 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
29556116 |
atatttcagatgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccag |
29556215 |
T |
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| Q |
209 |
cagtggcattagggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggta |
283 |
Q |
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| T |
29556216 |
cggtgacgatagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggta |
29556290 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0685 (Bit Score: 99; Significance: 8e-49; HSPs: 1)
Name: scaffold0685
Description:
Target: scaffold0685; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 109 - 283
Target Start/End: Original strand, 5215 - 5389
Alignment:
| Q |
109 |
atatttcagatgtggtatcaatttgcaaagacttcagctgaggaagctgcaacgaaatttctaacagaaaacaacatcgaccacgttgttatgaatccag |
208 |
Q |
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||||||||||||||||| |||||||||||| ||||||||||||||| ||||| |||||||||||||||||| |||| ||| |||||||||||||||||| |
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| T |
5215 |
atatttcagatgtggtaccaatttgcaaaggtttcagctgaggaagcagcaacaaaatttctaacagaaaacgacattgactacgttgttatgaatccag |
5314 |
T |
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| Q |
209 |
cagtggcattagggcctctcttacaatcagagcttaacgaaagttccactttaattcttaacttaataaatggta |
283 |
Q |
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| T |
5315 |
cggtgacgatagggcctctcttacaaccagagcttaacggaagttcctccttaatttttgacttaataaagggta |
5389 |
T |
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