View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14861_low_17 (Length: 329)
Name: NF14861_low_17
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_17 |
 | |
|
| [»] scaffold1155 (1 HSPs) |
| | |
|
| [»] scaffold0345 (1 HSPs) |
| | |
|
| [»] scaffold0105 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 2 - 297
Target Start/End: Complemental strand, 21833441 - 21833146
Alignment:
| Q |
2 |
aagaatgtacttttcactatataaggggtagctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaatta |
101 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
21833441 |
aagaatgtacttttgactatataaggggtagctaacgtcgagttcttcgtgcaaggggaaacattcgacgatgaggaacaggtcagtggtattgaaatta |
21833342 |
T |
|
| Q |
102 |
gcaattctggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtg |
201 |
Q |
| |
|
|||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21833341 |
gcaattttggaacaagtgagagaggtcaaagtagtaatgttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtg |
21833242 |
T |
|
| Q |
202 |
acttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtcaccgtggaagcgagagaggttaagggaggtaagattggtga |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
21833241 |
acttgatgttcaatgatgggaaacgagagatttgacggagaaggttgttgaggtcaccgtggaagcgagagaggttaagggaggtaaggttggtga |
21833146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 110 - 216
Target Start/End: Original strand, 553759 - 553865
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
209 |
Q |
| |
|
|||||| | ||||||||||||||| |||| |||||| | ||| |||||||||||| |||||||||||||||||| | ||||| || |||||| ||| | |
|
|
| T |
553759 |
ggaacaggtgagagaggtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaatggtgggtttttgggagagatcgagtgatgtgagg |
553858 |
T |
|
| Q |
210 |
ttcaatg |
216 |
Q |
| |
|
||||||| |
|
|
| T |
553859 |
ttcaatg |
553865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 202
Target Start/End: Complemental strand, 7225293 - 7225125
Alignment:
| Q |
33 |
ctaacgtcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaag |
132 |
Q |
| |
|
|||| |||||||||||||||||| |||||||| ||| |||||||||||| ||||||| || ||| | | || | ||||||| | |||||||||||||| |
|
|
| T |
7225293 |
ctaaggtcgagttcttcgagcaaagggaaacaatccgcgatgaggaacatgtcagtgctagtgaca-gaataaatgtggaacatgtgagagaggtcaaag |
7225195 |
T |
|
| Q |
133 |
tagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
202 |
Q |
| |
|
| |||| ||||| | || | || |||||||| ||| |||||| ||| ||| || |||||||| ||||| |
|
|
| T |
7225194 |
ttgtaatattttgagaaagagcttgcaacccacgtgctggaatgatggatttattcgagatattaagtga |
7225125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 39 - 202
Target Start/End: Complemental strand, 8186486 - 8186323
Alignment:
| Q |
39 |
tcgagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaa |
138 |
Q |
| |
|
||||||||||| || || || ||||| || |||||||||| | ||||||| |||||| | |||| ||||||| | ||| ||||||||||| |||| |
|
|
| T |
8186486 |
tcgagttcttctaggaaaggaaaacaatcggcgatgaggaagatgtcagtgctattgatagattcaatgttggaacatgtgagtgaggtcaaagttgtaa |
8186387 |
T |
|
| Q |
139 |
agttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtga |
202 |
Q |
| |
|
||| | | | ||||||||| |||| ||| ||||||||||||||||| |||| ||||||||| |
|
|
| T |
8186386 |
tatttcgggagagaactcgcaatccatttgcaggaatggtgggtttgttagagagattgagtga |
8186323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 661902 - 661962
Alignment:
| Q |
154 |
ctcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaa |
214 |
Q |
| |
|
||||||| |||| ||||||||||||| || |||||||| |||||||||| |||| ||||| |
|
|
| T |
661902 |
ctcgcaaaccattagcgggaatggtggtttggttggagagattgagtgacgtgattttcaa |
661962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 79; Significance: 7e-37; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 41 - 199
Target Start/End: Complemental strand, 19467556 - 19467398
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||||||||| || ||||||||| |||||||||||||||||||||||||||||| ||||| | |||||| ||||||||||||||| |||| |
|
|
| T |
19467556 |
gagttcttcgagcaaaggaaaacattccgcgatgaggaacaggtcagtggtattgaaatctgcaatgtcgaaacaagtgagagaggtcaaagttgtaata |
19467457 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgag |
199 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| || ||||||||||| |||| |
|
|
| T |
19467456 |
ttttgagtgaaaactcgcaacccatttgcgggaatggtgtgtctgttggagataatgag |
19467398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 41 - 195
Target Start/End: Original strand, 7555129 - 7555283
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||||||||| ||||||||||| | ||||| |||| |||| || |||||| | | | ||| ||||||||| ||| ||||| ||||| |||| |
|
|
| T |
7555129 |
gagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcattgctattgatagaatccattttggaacaagtgagtgaggttaaagttgtaata |
7555228 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatat |
195 |
Q |
| |
|
||||| | ||| ||||||| ||| ||| || |||||||||| |||||| |||| |
|
|
| T |
7555229 |
ttttgggagaaagctcgcaatccaattgcagggatggtgggttggttggaaatat |
7555283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 42 - 283
Target Start/End: Original strand, 10615645 - 10615886
Alignment:
| Q |
42 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
141 |
Q |
| |
|
||||||||||| || ||||||||||| | || |||||||| ||| | ||||||| ||||| || |||||||| ||||||||||||||| |||| | |
|
|
| T |
10615645 |
agttcttcgagtaaagggaaacattctgcaataaggaacagatcactactattgaagttagcgatgtgggaacaagtgagagaggtcaaagttgtaatct |
10615744 |
T |
|
| Q |
142 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
241 |
Q |
| |
|
|||| | ||| |||| ||||||| |||||||| ||||||| |||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| |
|
|
| T |
10615745 |
tttgggagaaagctcgtaacccatttgcgggaactgtgggttggttggaaatattaagtgatgtgatgttcaatgatgggaaacgagagattttgcggag |
10615844 |
T |
|
| Q |
242 |
aaggttgtcgaggtcaccgtggaagcgagagaggttaaggga |
283 |
Q |
| |
|
||| ||| ||||||||||||||||| | |||||| ||||| |
|
|
| T |
10615845 |
aagagcgtcaaggtcaccgtggaagcgtgtgaggttgaggga |
10615886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 10169175 - 10169037
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10169175 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10169076 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
179 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10169075 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10169037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 179
Target Start/End: Complemental strand, 10176700 - 10176562
Alignment:
| Q |
41 |
gagttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaag |
140 |
Q |
| |
|
||||||||| ||||| || |||||||| |||| || |||| |||||| ||||| |||| | |||| |||||||| ||||||||||||||| ||| |
|
|
| T |
10176700 |
gagttcttcaagcaaaggaaaacattctgcgataagaaacaagtcagtagtattaaaatcatcaatgtcggaacaagtgagagaggtcaaagttctaata |
10176601 |
T |
|
| Q |
141 |
ttttgtgcaaaaactcgcaacccatctgcgggaatggtg |
179 |
Q |
| |
|
||||| | |||||||||||||||| ||||||||||||| |
|
|
| T |
10176600 |
ttttgagagaaaactcgcaacccatttgcgggaatggtg |
10176562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 42 - 277
Target Start/End: Complemental strand, 13469773 - 13469538
Alignment:
| Q |
42 |
agttcttcgagcaaggggaaacattccacgatgaggaacaggtcagtggtattgaaattagcaattctggaacaagggagagaggtcaaagtagtaaagt |
141 |
Q |
| |
|
|||||||| ||||| || |||||||| | || |||||||||||| || |||||||||||||||| |||||||| ||||||||||| || ||| | |
|
|
| T |
13469773 |
agttcttcaagcaacggaaaacattctgcaataaggaacaggtcactgctattgaaattagcaatgtgggaacaagtgagagaggtcagcgttgtattct |
13469674 |
T |
|
| Q |
142 |
tttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggag |
241 |
Q |
| |
|
|||| | ||| |||| ||||||| ||| |||| ||||||| |||||||| ||| ||||| ||||||||||||||| ||| |||||||||| ||||| |
|
|
| T |
13469673 |
tttgggagaaagctcgtaacccatttgcaggaacagtgggttggttggagagattaagtgatgtgatgttcaatgatgagaagcgagagattttgcggag |
13469574 |
T |
|
| Q |
242 |
aaggttgtcgaggtcaccgtggaagcgagagaggtt |
277 |
Q |
| |
|
||| ||| ||||| || |||||||| | |||||| |
|
|
| T |
13469573 |
aagagcgtcaaggtccccatggaagcgtgtgaggtt |
13469538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 165
Target Start/End: Complemental strand, 51763446 - 51763391
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccat |
165 |
Q |
| |
|
|||||||| |||||| |||||||| |||| ||||||| ||||||||||||||||| |
|
|
| T |
51763446 |
ggaacaagtgagagatgtcaaagttgtaatcttttgtgaaaaaactcgcaacccat |
51763391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 244
Target Start/End: Original strand, 6417092 - 6417226
Alignment:
| Q |
110 |
ggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatg |
209 |
Q |
| |
|
|||||||| ||||||||||||||| ||| ||||| | ||| |||| ||||||| | |||||| ||||||| |||||||||||| ||||| ||||| |
|
|
| T |
6417092 |
ggaacaagtgagagaggtcaaagttgtattcttttgggagaaagctcgtaacccatttacgggaaaagtgggttggttggagatattaagtgatgtgatg |
6417191 |
T |
|
| Q |
210 |
ttcaatgatgggaaacgagagatttgacggagaag |
244 |
Q |
| |
|
||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
6417192 |
ttcaatgatggaaaacgagagattttacggagaag |
6417226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 6588248 - 6588179
Alignment:
| Q |
188 |
ggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgtcgaggtca |
257 |
Q |
| |
|
||||| ||||||||| |||| ||||||| |||||||||||||||||| | ||||||| |||||||||| |
|
|
| T |
6588248 |
ggagagattgagtgaagtgattttcaatgttgggaaacgagagatttggcaaagaaggtcgtcgaggtca |
6588179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 234
Target Start/End: Complemental strand, 7993606 - 7993481
Alignment:
| Q |
109 |
tggaacaagggagagaggtcaaagtagtaaagttttgtgcaaaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgat |
208 |
Q |
| |
|
|||||||| ||||||||||||| | |||| |||||| ||||| ||||||| |||| ||||||| | || || || ||||||||| || || |||| |
|
|
| T |
7993606 |
tggaacaattgagagaggtcaaaattgtaatgttttgggcaaatgctcgcaaaccataggcgggaaagttgcattggtcggagatattaagggatgtgat |
7993507 |
T |
|
| Q |
209 |
gttcaatgatgggaaacgagagattt |
234 |
Q |
| |
|
|||||||||||||||| |||||||| |
|
|
| T |
7993506 |
gttcaatgatgggaaagtagagattt |
7993481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1155 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold1155
Description:
Target: scaffold1155; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 1902 - 1766
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
1902 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
1806 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaag |
289 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| |
|
|
| T |
1805 |
tgaggtcactgttgtaacacgagaggttaagggaggtaag |
1766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0345 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0345
Description:
Target: scaffold0345; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 289
Target Start/End: Original strand, 8314 - 8450
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
8314 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
8410 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaag |
289 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| |
|
|
| T |
8411 |
tgaggtcactgttgtaacacgagaggttaagggaggtaag |
8450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0105 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0105
Description:
Target: scaffold0105; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 150 - 289
Target Start/End: Complemental strand, 30665 - 30529
Alignment:
| Q |
150 |
aaaactcgcaacccatctgcgggaatggtgggtttgttggagatattgagtgacttgatgttcaatgatgggaaacgagagatttgacggagaaggttgt |
249 |
Q |
| |
|
|||||||||||||||||||||||||| |||||| || ||||| ||||||||| ||| ||||| |||||||||||||||||| | |||| || || |
|
|
| T |
30665 |
aaaactcgcaacccatctgcgggaattatgggttggtaggagagattgagtgatgtgaggttca---atgggaaacgagagatttcatggagtagcacgt |
30569 |
T |
|
| Q |
250 |
cgaggtcaccgtggaagcgagagaggttaagggaggtaag |
289 |
Q |
| |
|
|||||||| || | | | |||||||||||||||||||| |
|
|
| T |
30568 |
tgaggtcactgttgtaacacgagaggttaagggaggtaag |
30529 |
T |
|
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