View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_2 (Length: 781)
Name: NF14861_low_2
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 56 - 428
Target Start/End: Original strand, 2385534 - 2385906
Alignment:
| Q |
56 |
caatatggcgaaaacattgagggagggagaagaggaataggctgcacagccctagaggtaatcgtcatccaatgtacgaaaatctcacagggaaattccc |
155 |
Q |
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| T |
2385534 |
caatgtggcgaaaacagtgagcgagagagaagaggaataggctgtgtagcc-tagagggaatcgtcatccaatttacggaaatttcagagggaaattccc |
2385632 |
T |
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| Q |
156 |
tcaattcctctattctctgtcgcacatt-tttcccctaaatcgttaagcataattctgaaacggacaagatgtacacgtatgagatggaaaattgttacg |
254 |
Q |
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| T |
2385633 |
tcgattcctctattctctctcgcacattattttccctaaatcgttaagcataattctgaaacggacaagatgtacacgtatgagatggaaaattgttacg |
2385732 |
T |
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| Q |
255 |
cataggataagtgacaatcccctctttgtgccatgttagtaacatgacagatacatatgtgtcaaaaagtgtaacgttgtccacgtaatgagacttaaag |
354 |
Q |
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| T |
2385733 |
cataggataagtgacaatcccctcttcgtgccatgttagtaacatgacagatacatatgtgtcaaaaagtgtaacgttgtccacgtaatgagacttaaag |
2385832 |
T |
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| Q |
355 |
gatcaatgcgagacaaaaataaacataaatgacttagcttatataattaaacaacttaaaggactgcaaaatat |
428 |
Q |
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| T |
2385833 |
gatcaatgcgagacaaaaataaacataaatgactaagcttatataattaaacaacttaaaggactgcaaaatat |
2385906 |
T |
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Target: chr5 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 427 - 708
Target Start/End: Complemental strand, 5771263 - 5770979
Alignment:
| Q |
427 |
atgaaaaatgctatatgtagcgaataa--taattcacgaaagcacaacgaatagcgctcttgatataaattttccttataatt----gtgatactgtgtc |
520 |
Q |
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| T |
5771263 |
atgaaaaatgctatatgtagcgaataaaataattcacgaaagcacaacgaatagcgctcttgatataaattttccttataattataagtgatactgt--c |
5771166 |
T |
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| Q |
521 |
tttttgctttgtttttgtgcatcaatataattgacaaaacctactgctataattgttagtaaattaataatatatgtacactccaatttatgaagagctt |
620 |
Q |
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| T |
5771165 |
tttttgctttgtttttgtgcatcaatataattgacaaaacctactgctataattgttagggaat-aataatatatgtacactccaatttatgaagagctt |
5771067 |
T |
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| Q |
621 |
ttctctctataattaagccacgtatagacacgtaaggtgcaatggtgacatatggttgtagacattgagtgcatgtaaatgtaaatgt |
708 |
Q |
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| T |
5771066 |
ttctctctataattaagccacgtatagacacgtaaggtgcaatggtgacatatggttgtagacattgagtgcatgtaaatgtaaatgt |
5770979 |
T |
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