View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_21 (Length: 304)
Name: NF14861_low_21
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_21 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 5639142 - 5638829
Alignment:
| Q |
1 |
ctttagctgtagttgatgatgatggttcaagttgagcttgtcctcattaattcatgtcttttccattgttatcnnnnnnnnnnnnnnnnnnnnnnnnaag |
100 |
Q |
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| T |
5639142 |
ctttagctgtagttgatgatgatggttcaagttgagcttgtcctcgttaattcatgtcttttccattgttatctttttttcttccattttcatttttaag |
5639043 |
T |
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| Q |
101 |
ccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacattaaatattcacacttcggtgatgattttgca-----------a |
189 |
Q |
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| T |
5639042 |
ccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacattaaatattcacacttcggtgatgattttgcaagatttatttga |
5638943 |
T |
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| Q |
190 |
aaacacaatatatgtgaagtgtgaatgtttaataactatgattgattttctttcaaatnnnnnnnnnnnctgattgatttaatgatacttaattttaatc |
289 |
Q |
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| T |
5638942 |
aaacacaatatatgtgaagtgtgaatgtttaaaaactgtgattgattttctttcaaat-aaaaaaaaaactgatttatttaatgatacttaattttaatc |
5638844 |
T |
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| Q |
290 |
aattatttctgtgtc |
304 |
Q |
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| T |
5638843 |
aattatttctgtgtc |
5638829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 7e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 1337051 - 1336989
Alignment:
| Q |
1 |
ctttagctgtagttgatgatgatggttcaagttgagcttgtcctcattaattcatgtcttttc |
63 |
Q |
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| T |
1337051 |
ctttagatgtagttaatgatgatggttcaagttgatcttgtcctcattaatccatgtcttttc |
1336989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31938882 - 31938818
Alignment:
| Q |
1 |
ctttagctgtagttgatgatgatggttcaagttgagcttgtcctcattaattcatgtcttttcca |
65 |
Q |
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| T |
31938882 |
ctttagatgtagttgatgatgatggctcaagctgagcttgtcctcattcatccatgtcttttcca |
31938818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 45
Target Start/End: Complemental strand, 13535510 - 13535476
Alignment:
| Q |
11 |
agttgatgatgatggttcaagttgagcttgtcctc |
45 |
Q |
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| T |
13535510 |
agttgatgatgatgattcaagttgagcttgtcctc |
13535476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 13535049 - 13535009
Alignment:
| Q |
119 |
tggaattgtatgaatggatgtttgttcaattgatgacatta |
159 |
Q |
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| T |
13535049 |
tggaattgtatgattgaatgtttgtacaattgatgacatta |
13535009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 9389222 - 9389174
Alignment:
| Q |
17 |
tgatgatggttcaagttgagcttgtcctcattaattcatgtcttttcca |
65 |
Q |
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| T |
9389222 |
tgatgatggctcaagctgagcttgtcctcattaatccatgtcttttcca |
9389174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 9389145 - 9389084
Alignment:
| Q |
98 |
aagccaagagcattcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta |
159 |
Q |
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| T |
9389145 |
aagccaagaatattcaagccctggaattgtatgaatgaatgtttgtacaactgatgacatta |
9389084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 19810232 - 19810269
Alignment:
| Q |
1 |
ctttagctgtagttgatgatgatggttcaagttgagct |
38 |
Q |
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| T |
19810232 |
ctttagctgtagttgatgatgataattcaagttgagct |
19810269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 159
Target Start/End: Original strand, 19810358 - 19810407
Alignment:
| Q |
110 |
ttcaggctctggaattgtatgaatggatgtttgttcaattgatgacatta |
159 |
Q |
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| T |
19810358 |
ttcaggccctggaattgtatgattgaatgtttgtacaattgatgatatta |
19810407 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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