View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_23 (Length: 277)
Name: NF14861_low_23
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 261
Target Start/End: Original strand, 1158507 - 1158761
Alignment:
| Q |
4 |
atgtcgaagaaaatattgtgtataattcaaaatctgggagctttttcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctc |
103 |
Q |
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| T |
1158507 |
atgtcaaaaaaaatattgtgtataattcaaaatctgggagctttatcttgacgtatattaacaacattttcaaacagaatattttatattctttgacctc |
1158606 |
T |
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| Q |
104 |
attttcattaacttgtggacaatgccgccattaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaag |
203 |
Q |
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| T |
1158607 |
attttcattaacttgtggacaatgcc---attaacatttcattaacttgttttgcaaattattgtagtaggagtacatcaaaactgtgaactcatgtaag |
1158703 |
T |
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| Q |
204 |
ttaccacccttcttctgattttctttgaataacaaatccttgttttgtaccacatatg |
261 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1158704 |
ttaccacccttcttctgattttctttgaataacaaatccttgttttgtaccacatatg |
1158761 |
T |
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