View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_24 (Length: 275)
Name: NF14861_low_24
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_24 |
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| [»] chr8 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 30496190 - 30495931
Alignment:
| Q |
16 |
aatatgtgaactagactgatgctattagctggatacttttattgtataacacttcccttaaaattcttgcaacttgaatgcactcaccttttccttttaa |
115 |
Q |
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| T |
30496190 |
aatatgtgaactagactggtgctattagctggatacttttattgtataacacttcccttaaaattcttgcaactttaatgcactcatcttttccttttaa |
30496091 |
T |
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| Q |
116 |
gaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgcttgtatcggccag |
215 |
Q |
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| T |
30496090 |
gaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgcttgtatcggccag |
30495991 |
T |
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| Q |
216 |
ataaagaccctctacttcccatgtttcccccgtttggttcacaactgattctttcggatt |
275 |
Q |
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| T |
30495990 |
ataaagaccctctacttcccatgtttcccccgtttggttcacaaccgattctttcggatt |
30495931 |
T |
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Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 103 - 275
Target Start/End: Original strand, 10449309 - 10449481
Alignment:
| Q |
103 |
cttttccttttaagaacttcaagaacatgttgtgctgtgcaatatgcaatagcctgaacagtgaccattggattcacacctaaagctgtgggaaatacgc |
202 |
Q |
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||||||||||||||||| | ||||||| |||||| ||||| || ||||| | |||||||||| ||||||||||| || || ||||| ||||| || | |
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| T |
10449309 |
cttttccttttaagaacctgaagaacagattgtgcagtgcagtaagcaattgattgaacagtgatcattggattcatgcccaatgctgtaggaaagacac |
10449408 |
T |
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| Q |
203 |
ttgtatcggccagataaagaccctctacttcccatgtttcccccgtttggttcacaactgattctttcggatt |
275 |
Q |
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||| ||| |||| | ||||| |||| ||||||||||| ||||| || | ||||| || ||||| |||||||| |
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| T |
10449409 |
ttgcatctgccacaaaaagatcctccacttcccatgtctcccctgtctccttcaccaccgattccttcggatt |
10449481 |
T |
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