View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_28 (Length: 250)
Name: NF14861_low_28
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_28 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 7 - 250
Target Start/End: Complemental strand, 55506726 - 55506492
Alignment:
| Q |
7 |
gaaattaaaaatctaaccttctttcaacggcagagtgtgcaaagacaaaatcaagacattacaactacgtttagtaccccttagccgccattctagagat |
106 |
Q |
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| T |
55506726 |
gaaattaaaaatctaaccttctttcaacagcagagtgtgcaaagacaaaatcaagacattacaactacg-ttagtaccccttagccgccattctagagat |
55506628 |
T |
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| Q |
107 |
attatgaaaataaagcgaatgatagaaagacggcgatagaccaaaacgaacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaatccag |
206 |
Q |
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| T |
55506627 |
attatgaaaataaagagaaagatagaaagac--------acttgtgcgaacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaatccag |
55506536 |
T |
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| Q |
207 |
ggggataaaccatggcaagggaacaagagtacaaagcaaacaac |
250 |
Q |
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| T |
55506535 |
ggggataaaccatggcaagggaacaagagtacaaagcaaacaac |
55506492 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 202
Target Start/End: Complemental strand, 43996561 - 43996514
Alignment:
| Q |
155 |
aacgaagcgaactcaacatttgcatcaataagaccttgtcaggaaaat |
202 |
Q |
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| T |
43996561 |
aacgaagagaactcaacattcacatcaataagaccttgtgaggaaaat |
43996514 |
T |
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