View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14861_low_32 (Length: 211)

Name: NF14861_low_32
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14861_low_32
NF14861_low_32
[»] chr7 (3 HSPs)
chr7 (1-180)||(41688796-41688965)
chr7 (21-149)||(41681512-41681643)
chr7 (180-211)||(41689006-41689037)
[»] chr4 (4 HSPs)
chr4 (2-64)||(44668654-44668716)
chr4 (2-64)||(44687930-44687992)
chr4 (2-39)||(45095432-45095469)
chr4 (1-61)||(45088970-45089030)
[»] chr1 (4 HSPs)
chr1 (1-43)||(43983366-43983408)
chr1 (1-38)||(43986175-43986212)
chr1 (1-61)||(44004767-44004827)
chr1 (1-56)||(43908406-43908461)
[»] chr2 (1 HSPs)
chr2 (1-60)||(24002338-24002397)


Alignment Details
Target: chr7 (Bit Score: 114; Significance: 5e-58; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 41688796 - 41688965
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaattactcaaaacata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||        ||||||    
T  41688796 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgttaaaaaa--acacacaaagacaa--------aacata 41688885  T
Q  101 aagcatatctttgcacatgtagtcaccatcactttgaggcagcaacactaacacctcttttatcatccatccaattcaga 180  Q
     |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  41688886 cagcatatctttgcacatgtagtcaccatcactttgaggcagcaacagtaacacctcttttatcatccatccaattcaga 41688965  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 149
Target Start/End: Original strand, 41681512 - 41681643
Alignment:
Q  21 actctatactctttcatcaaccatgcaacccaatgagttttgttnnnnnnncacacacaaagacaattactcaaaacat---aaagcatatctttgcaca 117  Q
    |||| ||||||||||||||||||  ||||||||||||| |||||       ||||||||||| | || |||||||||||    |  |||||||||| | |    
T  41681512 actccatactctttcatcaaccacacaacccaatgagtcttgttcaaaaaacacacacaaaggcgatcactcaaaacatgcatattcatatctttgtata 41681611  T
Q  118 tgtagtcaccatcactttgaggcagcaacact 149  Q
     | ||||||| ||||||||||||| |||||||    
T  41681612 cgaagtcaccgtcactttgaggcaacaacact 41681643  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 211
Target Start/End: Original strand, 41689006 - 41689037
Alignment:
Q  180 atgggaaatttggaatagttttccaagaatct 211  Q
    ||||||||||||||||||||||||||||||||    
T  41689006 atgggaaatttggaatagttttccaagaatct 41689037  T

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Target: chr4 (Bit Score: 47; Significance: 5e-18; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 44668654 - 44668716
Alignment:
Q  2 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 64  Q
    ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44668654 tttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44668716  T

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Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 2 - 64
Target Start/End: Original strand, 44687930 - 44687992
Alignment:
Q  2 tttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttttgtt 64  Q
    ||||||||||||||||||||||| |||||||||||||| |||  |||||||||||||||||||    
T  44687930 tttagtccatgactcaacaactccatactctttcatcatccacacaacccaatgagttttgtt 44687992  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 45095432 - 45095469
Alignment:
Q  2 tttagtccatgactcaacaactctatactctttcatca 39  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  45095432 tttagtccatgactcaacaactccatactctttcatca 45095469  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 45088970 - 45089030
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 61  Q
    |||||| ||| ||||||| ||||| |||||||||||||| |||  ||||||||||||||||    
T  45088970 atttagcccacgactcaataactccatactctttcatcatccacacaacccaatgagtttt 45089030  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 43983366 - 43983408
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaacca 43  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  43983366 atttagtccatgactcaacaactccatactctttcatcaacca 43983408  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 43986175 - 43986212
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  43986175 atttagtccatgactcaacaactccatactctttcatc 43986212  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 44004767 - 44004827
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagtttt 61  Q
    ||||||||||||||||| |||||| |||||||||||||| |||  ||  ||||||||||||    
T  44004767 atttagtccatgactcagcaactccatactctttcatcatccacacagtccaatgagtttt 44004827  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 43908461 - 43908406
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatga 56  Q
    ||||||||||||||| | |||||| |||||||||||||| |||| ||| |||||||    
T  43908461 atttagtccatgacttagcaactccatactctttcatcatccatacaatccaatga 43908406  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24002397 - 24002338
Alignment:
Q  1 atttagtccatgactcaacaactctatactctttcatcaaccatgcaacccaatgagttt 60  Q
    |||| |||||||||||||||||||  |||| |||||||| |||  |||||||||||||||    
T  24002397 attttgtccatgactcaacaactccgtactttttcatcatccacacaacccaatgagttt 24002338  T

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