View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14861_low_4 (Length: 547)
Name: NF14861_low_4
Description: NF14861
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14861_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 19 - 487
Target Start/End: Original strand, 5579047 - 5579514
Alignment:
| Q |
19 |
ataactcatatttgaatcctactagtaaaatcagatttctgagatgcaatcaatatccagagccatcagtttttatattgaagttcattcaacatgtttt |
118 |
Q |
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| T |
5579047 |
ataactcatatttgaa-cctactagtaaaatcagatttctgagatgcaatcaatatccagagccatcagtttttatattgaagttcattcaacatgtttt |
5579145 |
T |
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| Q |
119 |
taaactgtgaattcaaacatgtgtatctcaacatatactccattcaagggatcaacaatgctgatgaaaaggatccaacagatgctattttacaatctta |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5579146 |
taaactgtgaattcaaacatgtgtatctcaacatatactccattcaagggatcaacaatgctgatgaaaaggatccaacagatgctattttacaatctta |
5579245 |
T |
|
| Q |
219 |
ttttacaatctagatcaatactactaacttgcagtgttctctgactgaactgtatcaacaatgctaatagtatcaatactactaacttgcaggcagtgtt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5579246 |
ttttacaatctagatcaatactactaacttgcagtgttctctgactgaactgtatcaacaatgctaatagtatcaatactactaacttgcaggcagtgtt |
5579345 |
T |
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| Q |
319 |
ctgtgatcgaagtgtaccgaggcttctagtatttgaaacaattgatgatgtacaccatccttaatattttatttcaagttaggaagtgnnnnnnngccat |
418 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
5579346 |
ctgtgatcgaagtgtacggaggcttctagtatttgaaacaattgatgatgtacaccatccttaatattttatttcaagttaggaagtg-aaaaaagccat |
5579444 |
T |
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| Q |
419 |
tttcttctattccaagaaacccatccaaataacaaaaccaaagcaa-catcatgtttgcaacaactcaga |
487 |
Q |
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| T |
5579445 |
tttcttctattccaagaaacccacccaaataacaaaaccaaagcaagcatcatgtttgcaacaactcaga |
5579514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 24259620 - 24259676
Alignment:
| Q |
38 |
tactagtaaaatcagatttctgagatgcaatcaatatccagagccatcagtttttat |
94 |
Q |
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|||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24259620 |
tacttgtaaagtcagatttctgggatgcaatcaatatccagagccacgagtttttat |
24259676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 93
Target Start/End: Complemental strand, 29877737 - 29877682
Alignment:
| Q |
38 |
tactagtaaaatcagatttctgagatgcaatcaatatccagagccatcagttttta |
93 |
Q |
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|||| ||||| ||| ||||||| ||||||||||||||||| |||||| |||||||| |
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| T |
29877737 |
tacttgtaaagtcaaatttctgggatgcaatcaatatccaaagccatgagttttta |
29877682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 159 - 188
Target Start/End: Complemental strand, 29877508 - 29877479
Alignment:
| Q |
159 |
cattcaagggatcaacaatgctgatgaaaa |
188 |
Q |
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| T |
29877508 |
cattcaagggatcaacaatgctgatgaaaa |
29877479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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