View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14862_high_4 (Length: 301)
Name: NF14862_high_4
Description: NF14862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14862_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 56068422 - 56068109
Alignment:
| Q |
1 |
tattctcaatctcaaaacaaaaatacaaatcatcactatacttaatgtgtatattataatctcaacaacaa---------------taacaaactagtgt |
85 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
56068422 |
tattctcaatctcaaaacaaaaatacaaatcatcactatacttaatgtgtatattataatctcaacaacaaaaatacaaacaacaataacaaactagtgt |
56068323 |
T |
|
| Q |
86 |
atagttctgcaatcagacattaaaagcctcaaaaagaggcataaataaacaaataaacctgctattagttgttgcaaatataattaaccttggaagaatc |
185 |
Q |
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||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068322 |
atagttctgcaatcaaacattaaaagcctcaaaaggaggcataaataaacaaataaacctgctattagttgttgcaaatataattaaccttggaagaatc |
56068223 |
T |
|
| Q |
186 |
gatgaatactaccttgctgctccttactactaccaatcatattcatagagaaattcttgtctccttcaatttccctatacttgagaagataacccttaat |
285 |
Q |
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||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56068222 |
gatgaatactaccttcctgctccttattactaccaatcatattcatagagaaattcttgtctccttcaatttccctatacttgagaagataacccttaag |
56068123 |
T |
|
| Q |
286 |
aagctctgcatatt |
299 |
Q |
| |
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| |||||||||||| |
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|
| T |
56068122 |
aggctctgcatatt |
56068109 |
T |
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