View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14862_low_3 (Length: 400)

Name: NF14862_low_3
Description: NF14862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14862_low_3
NF14862_low_3
[»] chr2 (1 HSPs)
chr2 (4-400)||(10753074-10753469)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 4 - 400
Target Start/End: Original strand, 10753074 - 10753469
Alignment:
Q  4 gatgtcgaagaatatgataccagtgttaacaatgaaacatgatgctaattgctaacacggcatacctcaaggtgcaggaggtccgggaagagaaagggag 103  Q
    ||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753074 gatgtcgaaaactatgataccagtgt-aacaatgaaacatgatgctaattgctaacacggcatacctcaaggtgcaggaggtccgggaagagaaagggag 10753172  T
Q  104 tgcctaaaatacgacctcatttggagatcaaaatattacttgaagatctacgctttgagaccaggttgattggagcccgtcaattttcgttggaataaaa 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753173 tgcctaaaatacgacctcatttggagatcaaaatattacttgaagatctaggctttgagaccaggttgattggagcccgtcaattttcgttggaataaaa 10753272  T
Q  204 ttcctctaaaatggaaaggtaagctagaaaacagactcatacgccgttagattcacacacaaactacttcactgttttcagtagaaaaaacagaaggcat 303  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10753273 ttcctctaaaatggaaaggtaagctagaaaacagactcatacgccgttagattcacacacaaactacttcactgttttcagtagaaaaaacagaaggcat 10753372  T
Q  304 atatatgtgtagacaggagtaagtcataagattttcccccgattctgtatgagtggataatagtccacctagatgaataacataatgttttccaggt 400  Q
    ||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  10753373 atatatgtgaagacaggagtaagtcataagattttcccccaattctgtatgagtggataataggccaactagatgaagaacataatgttttccaggt 10753469  T

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