View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14862_low_4 (Length: 365)
Name: NF14862_low_4
Description: NF14862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14862_low_4 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 18 - 365
Target Start/End: Complemental strand, 10753804 - 10753457
Alignment:
| Q |
18 |
tgagtttgacttttacctttgtagttactatggaagcctaggtacaagcaagcccacccactatcatgttttatgggatgagcacaagtttacatctgat |
117 |
Q |
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| T |
10753804 |
tgagtttgacttttacctttgtagttactatggaagcctaggtacaagcaagcccacccactatcatgttttatgggatgagcacaagtttacatctgat |
10753705 |
T |
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| Q |
118 |
gaattgcagaaacttatttatgagatgtgcttcacctttgcaaggtgcactaaacctgtgtctctagtccctcctgtgtattatgctgaccttgctgctt |
217 |
Q |
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| T |
10753704 |
gaattgcagaaacttatttatgagatgtgcttcacctttgcaaggtgcactaaacctgtgtctctagtccctcctgtgtattatgctgaccttgctgctt |
10753605 |
T |
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| Q |
218 |
atagaggacgattataccacgaagcaaagactgggatgcaacctaagaagtcaagaacatatttgtcttctaaagattcatcatcgattccaccgacagc |
317 |
Q |
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| T |
10753604 |
atagaggacgattataccacgaagcaaagactgggatgcaacctaagaagtcaagaacatatttgtcttctaaagattcatcatcgattccaccgacagc |
10753505 |
T |
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| Q |
318 |
ttcgtttgaacagggattttacaggctgcatgctgacctggaaaacat |
365 |
Q |
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| T |
10753504 |
ttcgtttgaacagggattttacaggctgcatgctgacctggaaaacat |
10753457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 247
Target Start/End: Original strand, 32553209 - 32553434
Alignment:
| Q |
22 |
tttgacttttacctttgtagttactatggaagcctaggtacaagcaagcccacccactatcatgttttatgggatgagcacaagtttacatctgatgaat |
121 |
Q |
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| T |
32553209 |
tttgacttttacctgtgtagtcactatggaagcctaggtacaagcaagcccactcactatcatgtcttgtgggatgagcacaggtttacttctgataatt |
32553308 |
T |
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| Q |
122 |
tgcagaaacttatttatgagatgtgcttcacctttgcaaggtgcactaaacctgtgtctctagtccctcctgtgtattatgctgaccttgctgcttatag |
221 |
Q |
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||||||| || || ||||| |||||||| |||||||||||||||||||||||||| ||| |||||||||| ||||| |||||||||||||||||||| || |
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| T |
32553309 |
tgcagaagctcatatatgatatgtgctttacctttgcaaggtgcactaaacctgtatctttagtccctccagtgtactatgctgaccttgctgcttacag |
32553408 |
T |
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| Q |
222 |
aggacgattataccacgaagcaaaga |
247 |
Q |
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|||| || ||||| | |||||||||| |
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| T |
32553409 |
aggaagactatactatgaagcaaaga |
32553434 |
T |
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