View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14862_low_8 (Length: 214)
Name: NF14862_low_8
Description: NF14862
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14862_low_8 |
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| [»] scaffold0667 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 9e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 188
Target Start/End: Original strand, 45242783 - 45242969
Alignment:
| Q |
2 |
aacagcagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttctaaacaacatttttcttatacacggata |
101 |
Q |
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| T |
45242783 |
aacaacagcagcaacccattttaaacaggaactgtacattaatctggaggaatttcactatacacaaatttctaaacaacatttttcttatacacggata |
45242882 |
T |
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| Q |
102 |
ccacagcagggtggaatagtctcaactcagagataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagagg |
188 |
Q |
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| T |
45242883 |
ccacagcagggtggaatagtctcaactcagaaataagctcgtcaaaatgatgatttaggagtgaggatatataaaataacgaagagg |
45242969 |
T |
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Target: scaffold0667 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0667
Description:
Target: scaffold0667; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 107 - 163
Target Start/End: Original strand, 2000 - 2058
Alignment:
| Q |
107 |
gcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagt |
163 |
Q |
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| T |
2000 |
gcagggtggaatagtctcaacattcagaaataagctggtcaaaataattatttaggagt |
2058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 165
Target Start/End: Complemental strand, 9061925 - 9061857
Alignment:
| Q |
99 |
ataccacagcagggtggaatagtctcaac--tcagagataagctcgtcaaaatgatgatttaggagtga |
165 |
Q |
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| T |
9061925 |
ataccacagcagggtggaatagtctccacattcagaaataagttggccaaaataattatttaggagtga |
9061857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 127
Target Start/End: Original strand, 9315508 - 9315536
Alignment:
| Q |
99 |
ataccacagcagggtggaatagtctcaac |
127 |
Q |
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| T |
9315508 |
ataccacagcagggtggaatagtctcaac |
9315536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 91 - 127
Target Start/End: Complemental strand, 12019637 - 12019601
Alignment:
| Q |
91 |
atacacggataccacagcagggtggaatagtctcaac |
127 |
Q |
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| T |
12019637 |
atacacagataccacaacagggtggaatagtctcaac |
12019601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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