View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_high_10 (Length: 239)
Name: NF14863_high_10
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 3 - 221
Target Start/End: Complemental strand, 2906522 - 2906304
Alignment:
| Q |
3 |
taactccgcgatacgatcacaataattattgtccaagtttccttctggttcaatagcattcagaacatgaatcatagaagggcctactgaattaccaacc |
102 |
Q |
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| T |
2906522 |
taactccgcgatacgatcacaataattattgtccaagtttccttctggttcaatagcattcagaacatgaatcatagaagggcctactgaattaccaacc |
2906423 |
T |
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| Q |
103 |
acatgagaaggataataacttccatcatggttgttatggttatcatcccaaccttgaaatggcacattattagaactgttaaaaataataccttgtgaat |
202 |
Q |
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| T |
2906422 |
acatgagaaggatgataacttccatcatggttgttatggttattatcccatccttgaaatggcacattattagaactgttaaaaataataccttgtgaat |
2906323 |
T |
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| Q |
203 |
tcatgttatatgtaggagg |
221 |
Q |
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| T |
2906322 |
tcatgttatatgtaggagg |
2906304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 163
Target Start/End: Complemental strand, 2894952 - 2894810
Alignment:
| Q |
18 |
atcacaataattattgtccaagtttccttctggttcaatagcattcagaacatgaatcatagaagggcctactgaattaccaaccacatgagaaggataa |
117 |
Q |
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| T |
2894952 |
atcaccataattgtagtccaagtttccttcttgttcaacaacattcataccaggaatcatagaagagcctattgaattgccgatcacattagaagaatgg |
2894853 |
T |
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| Q |
118 |
taacttccatcatggttgttatggttatcatcccaaccttgaaatg |
163 |
Q |
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| T |
2894852 |
tgacttccatcatg---attattgttattatcccaaccttgaaatg |
2894810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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