View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14863_high_12 (Length: 230)

Name: NF14863_high_12
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14863_high_12
NF14863_high_12
[»] chr7 (9 HSPs)
chr7 (44-218)||(39578063-39578237)
chr7 (82-218)||(39359690-39359826)
chr7 (82-218)||(39551714-39551850)
chr7 (85-218)||(39345145-39345278)
chr7 (82-218)||(39592573-39592709)
chr7 (82-218)||(39568561-39568697)
chr7 (82-214)||(39625169-39625300)
chr7 (85-218)||(39333866-39333999)
chr7 (81-218)||(39542497-39542634)
[»] chr2 (3 HSPs)
chr2 (98-213)||(44237170-44237285)
chr2 (98-213)||(44214202-44214317)
chr2 (98-213)||(44226372-44226487)
[»] chr4 (3 HSPs)
chr4 (86-210)||(2872979-2873103)
chr4 (98-215)||(2901734-2901851)
chr4 (102-215)||(2883176-2883289)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 3e-87; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 44 - 218
Target Start/End: Original strand, 39578063 - 39578237
Alignment:
Q  44 ttgagatggaacatttagcaaaagatgcaatgccgtgaactaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaact 143  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578063 ttgagatggaacatttagcaaaagatgcaatgccgtgcactaaccacatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaact 39578162  T
Q  144 gtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 218  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39578163 gtcaattctccaatgtgaagatcgttttgactgacataagcagcagttctttgaggtacaaactcattcatctca 39578237  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 218
Target Start/End: Complemental strand, 39359826 - 39359690
Alignment:
Q  82 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 181  Q
    |||||||||| | ||||||||| ||||||| ||| ||||||||  |||| ||||||||||| |||| |||||||||||||||||  ||||||   |||||    
T  39359826 actaaccataacgaggtccaactccttggactctagctgagaaggccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39359727  T
Q  182 agcagcagttctttgaggtacaaactcattcatctca 218  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  39359726 agcagcagttctttggggtacaaactcactcatctca 39359690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39551714 - 39551850
Alignment:
Q  82 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 181  Q
    |||||||||| | ||| ||||| |||||||  |||||||||||  |||| ||||||||||| |||| |||||||||||||||||  ||||||   |||||    
T  39551714 actaaccataacgaggcccaactccttggacccttgctgagaaagccaaggtttctctaacagtcatttctccaatgtgaagatcattttgatccacata 39551813  T
Q  182 agcagcagttctttgaggtacaaactcattcatctca 218  Q
    |||||||||||||||||| ||||||||||||||||||    
T  39551814 agcagcagttctttgaggcacaaactcattcatctca 39551850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 39345278 - 39345145
Alignment:
Q  85 aaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagc 184  Q
    ||||||||  ||||||||| ||||||| |||||| |||||  |||| ||||||||||| ||||||||||||||||||||||  ||||||   ||||||||    
T  39345278 aaccatattgaggtccaactccttggactcttgccgagaaggccaatgtttctctaacagtcaattctccaatgtgaagatcattttgatccacataagc 39345179  T
Q  185 agcagttctttgaggtacaaactcattcatctca 218  Q
    |||||||||||| || ||||| ||| ||||||||    
T  39345178 agcagttctttgggggacaaattcactcatctca 39345145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39592573 - 39592709
Alignment:
Q  82 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 181  Q
    |||||||||||  | | ||||| ||||||| |||||| |||||  |||  |||||||| || ||||||||||||| ||||||||  ||||||||||||||    
T  39592573 actaaccatattgatgcccaacgccttggactcttgcggagaaggccatcgtttctctgacagtcaattctccaaggtgaagatcattttgactgacata 39592672  T
Q  182 agcagcagttctttgaggtacaaactcattcatctca 218  Q
    ||||||||||||||| |||||||| || |||||||||    
T  39592673 agcagcagttctttggggtacaaattctttcatctca 39592709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 218
Target Start/End: Original strand, 39568561 - 39568697
Alignment:
Q  82 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 181  Q
    |||||||||| | ||||||||| ||||||| || |||||||||  |||| |||||||| ||||||| |||||||||||||||||  ||||||   |||||    
T  39568561 actaaccataacgaggtccaactccttggactcgtgctgagaaggccaaggtttctcttactgtcatttctccaatgtgaagatcattttgatccacata 39568660  T
Q  182 agcagcagttctttgaggtacaaactcattcatctca 218  Q
     |||||||||| ||| || ||||||||| ||||||||    
T  39568661 tgcagcagttcgttgggggacaaactcactcatctca 39568697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 82 - 214
Target Start/End: Original strand, 39625169 - 39625300
Alignment:
Q  82 actaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacata 181  Q
    |||||||||||| ||||||||| ||||| | ||||||||| ||  |||| |||||||| || |||||||| |||| ||||  ||  ||||||||||||||    
T  39625169 actaaccatatcgaggtccaactccttgaactcttgctgaaaaggccaaggtttctctgacagtcaattc-ccaaggtgagtatcattttgactgacata 39625267  T
Q  182 agcagcagttctttgaggtacaaactcattcat 214  Q
    ||||||||||||||| || ||||||||||||||    
T  39625268 agcagcagttctttgtggcacaaactcattcat 39625300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 85 - 218
Target Start/End: Complemental strand, 39333999 - 39333866
Alignment:
Q  85 aaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagc 184  Q
    ||||||||  ||||||||| ||||||| |||||| |||||  |||  ||||||||||| ||||||||||||||||||||||  ||||||   ||||| ||    
T  39333999 aaccatattgaggtccaactccttggactcttgccgagaaggccagtgtttctctaacagtcaattctccaatgtgaagatcattttgatccacatatgc 39333900  T
Q  185 agcagttctttgaggtacaaactcattcatctca 218  Q
    |||||||||||| || ||||| ||| ||||||||    
T  39333899 agcagttctttgggggacaaattcactcatctca 39333866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 81 - 218
Target Start/End: Original strand, 39542497 - 39542634
Alignment:
Q  81 aactaaccatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacat 180  Q
    ||||||||||| |  || ||||| |||||||  ||||| |||||  |||| ||||||||||| |||| ||||||||||||||| |  ||||||   ||||    
T  39542497 aactaaccataacgcggcccaactccttggacccttgccgagaaggccaaggtttctctaacagtcatttctccaatgtgaaggtcattttgatccacat 39542596  T
Q  181 aagcagcagttctttgaggtacaaactcattcatctca 218  Q
    |||| ||||||||||| || |||||||||  |||||||    
T  39542597 aagcggcagttctttgggggacaaactcacccatctca 39542634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 44237170 - 44237285
Alignment:
Q  98 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 197  Q
    |||||| |||||| |||||||||||||  |||| |||||||| || |||| ||||||||| |||| ||  | ||| |||| |||||| ||||||||||||    
T  44237170 tccaactccttggcatcttgctgagaaagccaaggtttctctcacagtcatttctccaatatgaacatcatgttggctgatataagccgcagttctttga 44237269  T
Q  198 ggtacaaactcattca 213  Q
    ||||||||||| ||||    
T  44237270 ggtacaaactcgttca 44237285  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 44214202 - 44214317
Alignment:
Q  98 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 197  Q
    |||||| |||||| | |||||||||||  | || ||||| || || |||| |||||||||||||| ||  |  || |||| |||||||||||||||||||    
T  44214202 tccaactccttggcaccttgctgagaaagctaaggtttccctcacagtcatttctccaatgtgaacatcatgctggctgatataagcagcagttctttga 44214301  T
Q  198 ggtacaaactcattca 213  Q
    ||||||||||||||||    
T  44214302 ggtacaaactcattca 44214317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 44226372 - 44226487
Alignment:
Q  98 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 197  Q
    |||||| |||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||  | ||| || | ||| |||||||||||||||    
T  44226372 tccaactccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttggcttatataggcagcagttctttga 44226471  T
Q  198 ggtacaaactcattca 213  Q
    ||||||||||||||||    
T  44226472 ggtacaaactcattca 44226487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 86 - 210
Target Start/End: Complemental strand, 2873103 - 2872979
Alignment:
Q  86 accatatctaggtccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagca 185  Q
    ||||||||| | |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||  | |||||| | ||| |||    
T  2873103 accatatcttgatccaactccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgca 2873004  T
Q  186 gcagttctttgaggtacaaactcat 210  Q
    |||||||||||||||||||| ||||    
T  2873003 gcagttctttgaggtacaaattcat 2872979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 98 - 215
Target Start/End: Original strand, 2901734 - 2901851
Alignment:
Q  98 tccaacaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttga 197  Q
    |||||| |||||| | |||||||||||  |||| ||||| ||||| |||| ||||||||| |||| ||  | |||||| | ||| |||||||||||||||    
T  2901734 tccaacgccttggcaccttgctgagaaagccaatgtttccctaacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctttga 2901833  T
Q  198 ggtacaaactcattcatc 215  Q
    |||||||| |||| ||||    
T  2901834 ggtacaaattcatccatc 2901851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 215
Target Start/End: Complemental strand, 2883289 - 2883176
Alignment:
Q  102 acaccttggaatcttgctgagaattccaaagtttctctaactgtcaattctccaatgtgaagatggttttgactgacataagcagcagttctttgaggta 201  Q
    ||||||||| | |||||||||||  |||| ||||| || || |||| ||||||||| |||| ||  | |||||| | ||| ||||||||||| |||||||    
T  2883289 acaccttggcaccttgctgagaaagccaaggtttccctcacagtcatttctccaatatgaacatcatgttgactaatatatgcagcagttctctgaggta 2883190  T
Q  202 caaactcattcatc 215  Q
    |||| |||| ||||    
T  2883189 caaattcatccatc 2883176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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