View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_high_3 (Length: 495)
Name: NF14863_high_3
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 131 - 478
Target Start/End: Complemental strand, 37062387 - 37062040
Alignment:
| Q |
131 |
ccgcatgaagctgtaactgctagctttacacccatcaatctctcatagactgacaaccaactacagctccaaacacagacatatttacaatttcatcatt |
230 |
Q |
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| T |
37062387 |
ccgcatgaagctgtaactgctagctttgcacccatcaatctctcatagactgacaaccaactacagctccaaacacagacagatttacaatttcatcatt |
37062288 |
T |
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| Q |
231 |
caattaaggatgagacttgagagtgtataaataacataaataatagtcgtataaaactttcttctgtcaacatagagaaatatacttatactagagtatg |
330 |
Q |
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| T |
37062287 |
caattaaggatgagacttgagagtgtataaataacacaaataatagtcgtataaaactttcttctgtcaacatagagaaatatacttatactagagtatg |
37062188 |
T |
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| Q |
331 |
aaaaatttgggcagcaagagtcccacatcggttatattgcaaatgagtttgctttcctcctagtataataatagggatgaaatctgcatatatccccacc |
430 |
Q |
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| T |
37062187 |
aaaaatttgggcagcatgagtcccacatcggttatattgaaaatgagtttgctttcctcctagtataataatagggatgaaatctacgtatttccacacc |
37062088 |
T |
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| Q |
431 |
atcggttacataacgtttccgttgtgtgcgttgcattccatatggttt |
478 |
Q |
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| T |
37062087 |
atcggttacataacgtttccgttgggtgcgttgcattccatatggttt |
37062040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 37062451 - 37062386
Alignment:
| Q |
1 |
tgttgatcaaaatatatcctcattcatnnnnnnnntggtactaatactagatttgggatatatacc |
66 |
Q |
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| T |
37062451 |
tgttgatcaaaatatatcctcattcataaaaaaaatggtactaatactagatttgggatatatacc |
37062386 |
T |
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