View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14863_high_4 (Length: 492)

Name: NF14863_high_4
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14863_high_4
NF14863_high_4
[»] chr7 (2 HSPs)
chr7 (18-480)||(440847-441309)
chr7 (60-113)||(440787-440839)
[»] chr4 (7 HSPs)
chr4 (69-267)||(51220004-51220201)
chr4 (72-186)||(35250151-35250265)
chr4 (73-189)||(51220795-51220911)
chr4 (79-312)||(51220305-51220537)
chr4 (165-275)||(51219540-51219646)
chr4 (90-125)||(35250268-35250303)
chr4 (209-295)||(51220940-51221028)
[»] chr1 (21 HSPs)
chr1 (99-236)||(27780941-27781078)
chr1 (99-226)||(27777434-27777561)
chr1 (99-226)||(27782400-27782527)
chr1 (71-291)||(21899126-21899349)
chr1 (69-291)||(17663423-17663648)
chr1 (72-171)||(38226964-38227063)
chr1 (84-195)||(38227192-38227306)
chr1 (69-291)||(17700331-17700556)
chr1 (99-171)||(38227135-38227207)
chr1 (84-171)||(38227048-38227135)
chr1 (72-138)||(27777591-27777657)
chr1 (72-138)||(27782304-27782370)
chr1 (207-257)||(22663779-22663829)
chr1 (99-136)||(27781080-27781117)
chr1 (348-400)||(38227348-38227400)
chr1 (99-138)||(27781156-27781195)
chr1 (320-358)||(27780888-27780926)
chr1 (416-479)||(27777352-27777415)
chr1 (87-138)||(27781234-27781285)
chr1 (416-479)||(27782546-27782609)
chr1 (107-144)||(21079010-21079047)
[»] chr8 (2 HSPs)
chr8 (225-399)||(44989125-44989308)
chr8 (161-316)||(44989772-44989927)


Alignment Details
Target: chr7 (Bit Score: 419; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 18 - 480
Target Start/End: Original strand, 440847 - 441309
Alignment:
Q  18 atgacaactcttgaccttaattcaattcgtcacnnnnnnnngctataaaagaaagagacactaattagtttcatcttcaaaatcatcacttggaagctcg 117  Q
    |||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  440847 atgacaactcttgaccttaattcaattcgtcacaaaaaaaagctataaaagaaagagacactaattagtttcatcttcaaagtcatcacttggaagctcg 440946  T
Q  118 ttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgc 217  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  440947 ttcaaatcaaaattcttcacaacttttggccctaattcagtaacaccttcattaatcatcttctcttcaataccatgattagaggtaggaggttccttgc 441046  T
Q  218 aatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatc 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441047 aatcttgtgatgtttgaaaaatcttacctttaggaattttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatc 441146  T
Q  318 accacttgttagcaacacaccttgttccttcttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttagtgccataacctccacga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  441147 accacttgttagcaacacaccttgttccttcttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttagtgccataacctccacga 441246  T
Q  418 gatatatgcaacaaagtttcagcagcaatcacatcatcatcagtattcatatatcttcttctc 480  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  441247 gatatatgcaacaaagtttcagcagcaatcacatcgtcatcagtattcatatatcttcttctc 441309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 440787 - 440839
Alignment:
Q  60 ctataaaagaaagagacactaattagtttcatcttcaaaatcatcacttggaag 113  Q
    |||||||| ||| |||||||  || |||||||||||||||||||||||||||||    
T  440787 ctataaaaaaaatagacactg-ttggtttcatcttcaaaatcatcacttggaag 440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 115; Significance: 3e-58; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 69 - 267
Target Start/End: Original strand, 51220004 - 51220201
Alignment:
Q  69 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 168  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||| | |||||| ||||||||||||||||  ||| |||     
T  51220004 aaagagacactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttcactttcg 51220103  T
Q  169 ttaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaac 267  Q
    ||||||||||||||||||||| ||| ||||||||    | |||||||||||||||||||||||||||||||| |  |||||||||||||||||||||||    
T  51220104 ttaatcttcttctcttcaatatcattattagaggagtcatgttccttgcaatcttgtgatgtttgaaaaatc-tgtctttaggaatcttgaacctcaac 51220201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 72 - 186
Target Start/End: Original strand, 35250151 - 35250265
Alignment:
Q  72 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 171  Q
    |||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||||||  || ||||||||    
T  35250151 gagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaattcttcacaacttttgacccgatttcagtttcagcttcatta 35250250  T
Q  172 atcttcttctcttca 186  Q
    |||||||||||||||    
T  35250251 atcttcttctcttca 35250265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 73 - 189
Target Start/End: Original strand, 51220795 - 51220911
Alignment:
Q  73 agacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaa 172  Q
    |||||||| || ||||||||||||||| |||||||||||||||||||||| ||||||||| | |||| | ||||||||||||||||  ||| ||| ||||    
T  51220795 agacactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttcactttcgttaa 51220894  T
Q  173 tcttcttctcttcaata 189  Q
    |||||||||||||||||    
T  51220895 tcttcttctcttcaata 51220911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 79 - 312
Target Start/End: Complemental strand, 51220537 - 51220305
Alignment:
Q  79 taattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttct 178  Q
    ||||| ||||||| ||||||| ||||||||||||| || || |||||| ||||| | |||  | |||| || |||| |||  ||||||||||||||||||    
T  51220537 taattggtttcatattcaaaagcatcacttggaagatcattaaaatcataattcataacatgtattgatccgaattaagtttcaccttcattaatcttct 51220438  T
Q  179 tctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaacgccaa---ctt 275  Q
    ||||||||||   ||| ||| | | |||   ||||||||||||||| |||||| ||||||||||| |||||| ||| ||||| ||||||||| |    ||    
T  51220437 tctcttcaat---atggttacaag-aggcaattccttgcaatcttgagatgttcgaaaaatcttatctttagaaattttgaaactcaacgccgaattgtt 51220342  T
Q  276 cttttcattgtggcaattatctttcaatgtttcatca 312  Q
    |||||||||||||| || ||| ||| ||| |||||||    
T  51220341 cttttcattgtggctatcatccttctatgattcatca 51220305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 51219646 - 51219540
Alignment:
Q  165 ttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctc 264  Q
    ||||| ||||||||||||||||||| | | |||||| |     ||||||||||||||||| |||||||| ||||||||  |||||| | ||||||| |||    
T  51219646 ttcatcaatcttcttctcttcaatatcgttattagaagc----ggttccttgcaatcttgagatgtttgcaaaatcttgtctttagaactcttgaaactc 51219551  T
Q  265 aacgccaactt 275  Q
    |||||| ||||    
T  51219550 aacgccgactt 51219540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 90 - 125
Target Start/End: Original strand, 35250268 - 35250303
Alignment:
Q  90 atcttcaaaatcatcacttggaagctcgttcaaatc 125  Q
    ||||||||||||||||||||||||||||||||||||    
T  35250268 atcttcaaaatcatcacttggaagctcgttcaaatc 35250303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 51220940 - 51221028
Alignment:
Q  209 gttccttgcaatcttgtgatgtttgaaaaa-tcttacctttaggaatcttgaacctcaacgccaacttct---tttcattgtggcaattat 295  Q
    |||||||||||||  ||||||||||||||| ||||  ||||||||||||| ||||| ||| || ||||||   |||||||||||| |||||    
T  51220940 gttccttgcaatc--gtgatgtttgaaaaaatcttgtctttaggaatcttaaaccttaacacccacttcttcatttcattgtggctattat 51221028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 99 - 236
Target Start/End: Complemental strand, 27781078 - 27780941
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 198  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||  ||  ||||||||||||||||||||||||||||||  ||||||    
T  27781078 atcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaattttgtttcaccttcattaatcttcttctcttcaatactttgatta 27780979  T
Q  199 gaggtaggaggttccttgcaatcttgtgatgtttgaaa 236  Q
    |||| || |||||||||||||| ||||| |||||||||    
T  27780978 gaggcagcaggttccttgcaatattgtggtgtttgaaa 27780941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 99 - 226
Target Start/End: Complemental strand, 27777561 - 27777434
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 198  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| |||||||||||||||||||  ||||||    
T  27777561 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcttcaatactttgatta 27777462  T
Q  199 gaggtaggaggttccttgcaatcttgtg 226  Q
    |||| || ||||||||| ||||||||||    
T  27777461 gaggcagtaggttcctttcaatcttgtg 27777434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 27782400 - 27782527
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaatcttcttctcttcaataccatgatta 198  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||| ||||||||||| |||||||  ||||||    
T  27782400 atcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcaccttcattcatcttcttctcatcaatactttgatta 27782499  T
Q  199 gaggtaggaggttccttgcaatcttgtg 226  Q
    |||| || ||||||||| ||||||||||    
T  27782500 gaggcagaaggttccttacaatcttgtg 27782527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 71 - 291
Target Start/End: Original strand, 21899126 - 21899349
Alignment:
Q  71 agagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatt 170  Q
    ||||||||||||| ||||||||||||||||| ||||||| || ||| ||||||||||||||| |   |||| ||||||||||||| ||  |||||||  |    
T  21899126 agagacactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcaccttcgct 21899225  T
Q  171 aatcttcttct---cttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctcaac 267  Q
    |||||| ||||   |||||||| |||| ||||||     |||||||||||||||||| ||| |||| ||||||||  ||||||||||||| |||||||||    
T  21899226 aatctttttcttgccttcaatatcatggttagagtctacaggttccttgcaatcttgcgatttttgtaaaatcttgtctttaggaatcttcaacctcaac 21899325  T
Q  268 gccaacttcttttcattgtggcaa 291  Q
     |||| |||||||| ||| |||||    
T  21899326 accaagttcttttcgttgcggcaa 21899349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 69 - 291
Target Start/End: Complemental strand, 17663648 - 17663423
Alignment:
Q  69 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 168  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||| ||  || ||||     
T  17663648 aaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccctaattcggtttcatcttcg 17663549  T
Q  169 ttaa---tcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctca 265  Q
     |||   ||||| |  |||||||| || | ||||||   |  ||||||||| ||||||||||||||||||||||| |  ||||||||||| | ||| |||    
T  17663548 ctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttgaaaaatcgtgtctttaggaatcctcaacttca 17663449  T
Q  266 acgccaacttcttttcattgtggcaa 291  Q
     | |||| |||||||| |||||||||    
T  17663448 gcaccaagttcttttcgttgtggcaa 17663423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 72 - 171
Target Start/End: Original strand, 38226964 - 38227063
Alignment:
Q  72 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 171  Q
    |||||||||||| |||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||  |||||||||||    
T  38226964 gagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccctgattcagtttcaccttcatta 38227063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 195
Target Start/End: Original strand, 38227192 - 38227306
Alignment:
Q  84 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcattaa---tcttcttc 180  Q
    ||||||| |||||  ||| ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||   ||||||||    
T  38227192 agtttcaccttcattatcgtcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcaccttcattaatcgtcttcttc 38227291  T
Q  181 tcttcaataccatga 195  Q
    ||||||||| |||||    
T  38227292 tcttcaatatcatga 38227306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 69 - 291
Target Start/End: Original strand, 17700331 - 17700556
Alignment:
Q  69 aaagagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttca 168  Q
    ||||| |||||||||  ||||||||||||||||||||||||||||||| |||||||||| |||| | |||||| ||||||||||||| ||  || |||      
T  17700331 aaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccctaattcggtttcatcttag 17700430  T
Q  169 ttaa---tcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaacctca 265  Q
     |||   ||||| |  |||||||| || | ||||||   |  ||||||||| ||||||||||||||||||||||| |  ||||||||||| | ||| |||    
T  17700431 ctaacattcttcatgccttcaatatcaaggttagagcctgctggttccttggaatcttgtgatgtttgaaaaatcgtgtctttaggaatcctcaacttca 17700530  T
Q  266 acgccaacttcttttcattgtggcaa 291  Q
     | |||| |||||||| |||||||||    
T  17700531 gcaccaagttcttttcgttgtggcaa 17700556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 99 - 171
Target Start/End: Original strand, 38227135 - 38227207
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 171  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||  |||||||||||    
T  38227135 atcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcaccttcatta 38227207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 84 - 171
Target Start/End: Original strand, 38227048 - 38227135
Alignment:
Q  84 agtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctaattcagtaacaccttcatta 171  Q
    ||||||| |||||  ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||   |||||||||||    
T  38227048 agtttcaccttcattatcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcaccttcatta 38227135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 138
Target Start/End: Complemental strand, 27777657 - 27777591
Alignment:
Q  72 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 138  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27777657 gagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 27782304 - 27782370
Alignment:
Q  72 gagacactaattagtttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 138  Q
    |||||||||||| |||||||||||| |||||||||||| || |||||||||||| ||||||||||||    
T  27782304 gagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 207 - 257
Target Start/End: Original strand, 22663779 - 22663829
Alignment:
Q  207 aggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatctt 257  Q
    |||||||||||||| |||||||||||||||||||||  |||||||||||||    
T  22663779 aggttccttgcaattttgtgatgtttgaaaaatcttgtctttaggaatctt 22663829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 27781117 - 27781080
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttca 136  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27781117 atcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 348 - 400
Target Start/End: Original strand, 38227348 - 38227400
Alignment:
Q  348 cttcttcttctcatcatcatccatcatattgcaagaaagtttttgccttttag 400  Q
    |||||||||||||| ||||||||||||||||||||| || |||| ||||||||    
T  38227348 cttcttcttctcattatcatccatcatattgcaagagagatttttccttttag 38227400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 99 - 138
Target Start/End: Complemental strand, 27781195 - 27781156
Alignment:
Q  99 atcatcacttggaagctcgttcaaatcaaaattcttcaca 138  Q
    ||||||||||||||||| ||||||||||||||||||||||    
T  27781195 atcatcacttggaagcttgttcaaatcaaaattcttcaca 27781156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 320 - 358
Target Start/End: Complemental strand, 27780926 - 27780888
Alignment:
Q  320 cacttgttagcaacacaccttgttccttcttcttcttct 358  Q
    ||||||||||||||||| |||||||||||||||||||||    
T  27780926 cacttgttagcaacacatcttgttccttcttcttcttct 27780888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 479
Target Start/End: Complemental strand, 27777415 - 27777352
Alignment:
Q  416 gagatatatgcaacaaagtttcagcagcaatcacatcatcatcagtattcatatatcttcttct 479  Q
    ||||||||||||| | ||||||||| |||||  ||||||||||| ||||||| || ||||||||    
T  27777415 gagatatatgcaatagagtttcagctgcaatagcatcatcatcattattcatgtaacttcttct 27777352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 138
Target Start/End: Complemental strand, 27781285 - 27781234
Alignment:
Q  87 ttcatcttcaaaatcatcacttggaagctcgttcaaatcaaaattcttcaca 138  Q
    |||||||||||||| ||  ||||||||| ||||| |||||||||||||||||    
T  27781285 ttcatcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 416 - 479
Target Start/End: Original strand, 27782546 - 27782609
Alignment:
Q  416 gagatatatgcaacaaagtttcagcagcaatcacatcatcatcagtattcatatatcttcttct 479  Q
    ||||||||||||| | ||||||||| |||||  ||||||||||| ||||||| || ||||||||    
T  27782546 gagatatatgcaatagagtttcagctgcaatagcatcatcatcattattcatgtaacttcttct 27782609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 144
Target Start/End: Complemental strand, 21079047 - 21079010
Alignment:
Q  107 ttggaagctcgttcaaatcaaaattcttcacaactttt 144  Q
    |||||||||||||||||||||||||| | |||||||||    
T  21079047 ttggaagctcgttcaaatcaaaattcctaacaactttt 21079010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 225 - 399
Target Start/End: Complemental strand, 44989308 - 44989125
Alignment:
Q  225 tgatgtttgaaaaatcttacctttaggaatcttgaacctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatatcac----- 319  Q
    ||||||||||||||||||  |||||||| |||| ||||||||| |||| || ||||||||||||| |||||| ||| |  ||| ||| |||||||         
T  44989308 tgatgtttgaaaaatcttgtctttaggattcttcaacctcaacaccaagttgttttcattgtggctattatccttccacatttgatctatatcacttaca 44989209  T
Q  320 -------cacttgttagcaacacaccttgttccttcttcttcttctcatcatcatccatcatattgcaagaaagtttttgcctttta 399  Q
           |||||||||||||||||||||| |||||| ||||||   ||| ||||||||||||||||||||||||| |||||||||||    
T  44989208 acatgaccacttgttagcaacacaccttgctccttcatcttct---cattatcatccatcatattgcaagaaagtgtttgcctttta 44989125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 161 - 316
Target Start/End: Original strand, 44989772 - 44989927
Alignment:
Q  161 caccttcattaatcttcttctcttcaataccatgattagaggtaggaggttccttgcaatcttgtgatgtttgaaaaatcttacctttaggaatcttgaa 260  Q
    ||||||| ||||||||||||| ||||||| |||||||||||     ||||||||||||||||||||||||| ||||||||||  |||||||| | || |     
T  44989772 caccttcgttaatcttcttctattcaatatcatgattagagccttcaggttccttgcaatcttgtgatgttagaaaaatcttctctttaggattattcag 44989871  T
Q  261 cctcaacgccaacttcttttcattgtggcaattatctttcaatgtttcatcaatat 316  Q
    ||||| | ||||  | |||||||| |||| | |||  ||| |||||||||||||||    
T  44989872 cctcagcaccaagatgttttcattatggcgaatattcttccatgtttcatcaatat 44989927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University