View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14863_high_9 (Length: 321)
Name: NF14863_high_9
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_high_9 |
 | |
|
| [»] scaffold0710 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 278; Significance: 1e-155; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 1 - 305
Target Start/End: Complemental strand, 51808663 - 51808358
Alignment:
| Q |
1 |
cggtccctatactaacagtcacggcatggggttttgttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaa |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
51808663 |
cggtccctatactaacagtcatggcatggggttttgttaaagagcacgcgccgaatgatctcttgcatcaataactttatcaacaatatgttgacagcaa |
51808564 |
T |
|
| Q |
101 |
agtttgcatctgatacgatatgaatgaaccgtgtgcatctattttcaacggtcaatctcaggtc-aataacaactgtaatttcgttgcatgttgtatgtt |
199 |
Q |
| |
|
| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
51808563 |
aatttgcatctgatacgatatgaatgaaccatgtgcatctattttcaacggtcaatctcaggtcaaataacaactgtaatttcgttgcatgttgtatgtt |
51808464 |
T |
|
| Q |
200 |
atatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttct |
299 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51808463 |
atatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttttct |
51808364 |
T |
|
| Q |
300 |
gatatt |
305 |
Q |
| |
|
|||||| |
|
|
| T |
51808363 |
gatatt |
51808358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 197 - 305
Target Start/End: Complemental strand, 51804516 - 51804409
Alignment:
| Q |
197 |
gttatatcttaaattctttgttattatgcactaatagtggacttgttatattcatctactcttgattgagaaattgcctgctcgagatatttgaaagttt |
296 |
Q |
| |
|
||||||||||||||||||| | |||||| |||| |||||||||||| |||||||||| | || |||||||||||||||||||| |||||||||||||| |
|
|
| T |
51804516 |
gttatatcttaaattctttatg-ttatgctctaagagtggacttgttctattcatctaagcatgcttgagaaattgcctgctcgatatatttgaaagttt |
51804418 |
T |
|
| Q |
297 |
tctgatatt |
305 |
Q |
| |
|
||||||||| |
|
|
| T |
51804417 |
tctgatatt |
51804409 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 36 - 110
Target Start/End: Complemental strand, 51804713 - 51804639
Alignment:
| Q |
36 |
gttaaaaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatc |
110 |
Q |
| |
|
|||| ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||| |
|
|
| T |
51804713 |
gttacaaagcacatgccaaatgatctcttgcattaacaactttatcaacaatatgttgacagccaagtttacatc |
51804639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 266 - 305
Target Start/End: Complemental strand, 51780679 - 51780640
Alignment:
| Q |
266 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51780679 |
gaaattgcctgctcgagatatttgaaagttttctgatatt |
51780640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 41 - 97
Target Start/End: Complemental strand, 51773195 - 51773139
Alignment:
| Q |
41 |
aaagcacgcgccgaatgatctcttgcatcaacaactttatcaacaatatgttgacag |
97 |
Q |
| |
|
|||||||||| | ||||||||| | ||| ||||||||||||||||||||||||||| |
|
|
| T |
51773195 |
aaagcacgcgtcaaatgatctcgtttatccacaactttatcaacaatatgttgacag |
51773139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 128
Target Start/End: Complemental strand, 51790411 - 51790337
Alignment:
| Q |
54 |
aatgatctcttgcatcaacaactttatcaacaatatgttgacagcaaagtttgcatctgatacgatatgaatgaa |
128 |
Q |
| |
|
|||||| ||||||||| || ||||||||||||||||||||| ||| | || |||||| | ||||||||||||| |
|
|
| T |
51790411 |
aatgatttcttgcatctactactttatcaacaatatgttgaaagccatgtctgcatccgtgccgatatgaatgaa |
51790337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 98
Target Start/End: Complemental strand, 51780811 - 51780779
Alignment:
| Q |
66 |
catcaacaactttatcaacaatatgttgacagc |
98 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |
|
|
| T |
51780811 |
catccacaactttatcaacaatatgttgacagc |
51780779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0710 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0710
Description:
Target: scaffold0710; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 254 - 305
Target Start/End: Complemental strand, 7335 - 7284
Alignment:
| Q |
254 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7335 |
actcttgattgagaaattgcctgctcgagatatttgaaagttttctgatatt |
7284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University