View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_low_1 (Length: 776)
Name: NF14863_low_1
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 405; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 19 - 451
Target Start/End: Original strand, 19209819 - 19210251
Alignment:
| Q |
19 |
tattggatgtttgtgtgtgtgagccagagaacactgttagtcgagtgttgatgattatatgggcaatttggcagaacctgaattattttatttggaatca |
118 |
Q |
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| T |
19209819 |
tattggatgtttgtgtgtgtgagccagagagcactgttagtcgagtgttgatgattatatggggaatttggcagaacctgaattattttatttggaatca |
19209918 |
T |
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| Q |
119 |
gaagcagtcaagagcaggacagattgttaacgctgtgcaaatgatgcatgctgaatggcggatggtgcagaacgcgactcagaatgttgtagcagcagac |
218 |
Q |
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| T |
19209919 |
gaagcagtcaagagcaggacagattgttaacgctgtgcaaatgatgcatgctgaatggcggatggtgcagaacgcgactcagaatgttgtagcagcagac |
19210018 |
T |
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| Q |
219 |
agccacgactggaacagacaagtactagcgcagcgtgacttccagtgtagcatggatgatagtttctttcgaaattgtgacagaacaggttatggaggct |
318 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19210019 |
agccgcgactggaacagacaagtactagcgcagcgtgacttccggtgtagcatggatgatagtttctttcgaaattgtgacagaacaggttatggaggct |
19210118 |
T |
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| Q |
319 |
gcattcgtagtagggaaggtgactttgtgaaggcttggacaggttggatgcagcctgagatgcaagtgtatgagggagaggccgttgcattgcagactgt |
418 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
19210119 |
gcattcgtggtagggaaggtgactttgtgaaggcttggacaggttggatgcagcctgagatgcaagtgtatgagggagaggccgttgcatttcagactgt |
19210218 |
T |
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| Q |
419 |
catgaggttggtccagacaatgggagtatcaag |
451 |
Q |
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| T |
19210219 |
catgaggttggtacagacaatgggagtatcaag |
19210251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 448 - 767
Target Start/End: Original strand, 19211227 - 19211546
Alignment:
| Q |
448 |
caagggtacaacggaccctccacgagtctatgtagactcgcgagcttcacaacctcgctaacatggttaaattattgacagtgcaagtaagtatatatca |
547 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19211227 |
caagtgtacaacggaccctccacgagtctatgtagactcgcgagcttgacaacctcgctaacatggttaaattattgacagtgcaagtaagtatatatca |
19211326 |
T |
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| Q |
548 |
atcatattctataaactcgtcaatgcaatttcccaaacttcttcctattgtttctgttgaaagatgcaagctgttaaccattgcacaacctcgcagtctt |
647 |
Q |
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| T |
19211327 |
atcatattctataaactcgtcaatgcaatttcccaaacttcttcctattgtttctgttgaaagatgcaagctgttaaccttggcacaacctcgcagtctt |
19211426 |
T |
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| Q |
648 |
ttcagccttctttggaacctatggaagatgttgactatgttgtgttttcttacaagcatttgcgtcttgtaccttaaatgtaactgagtctttttgtagt |
747 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19211427 |
ttcagccttctttggaacctatggaagatgttgactatgttgtgttttcttacaagcatttgcgtcttgtaccttaaatgtaactgagtctttttgtagt |
19211526 |
T |
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| Q |
748 |
tactcactcctttgcttctc |
767 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19211527 |
tactcactcctttgcttctc |
19211546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 66; Significance: 9e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 55 - 451
Target Start/End: Complemental strand, 9336698 - 9336303
Alignment:
| Q |
55 |
ttagtcgagtgttgatgattatatgggcaatttggcagaacctgaatt-attttatttggaatcagaagcagtcaagagcaggacagattgttaacgctg |
153 |
Q |
| |
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||||||||||||||||||||||||| | ||||||| |||| |||| | |||||||||||||||| ||| || ||| ||| |||||||||||||||||| |
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| T |
9336698 |
ttagtcgagtgttgatgattatatgaggaatttggatgaac-tgaagtgattttatttggaatcataagttgttaagcgcatgacagattgttaacgctg |
9336600 |
T |
|
| Q |
154 |
tgcaaatgatgcatgctgaatggcggatggtgcagaacgcgactcagaatgttgtagcagcagacagccacgactggaacagacaagtactagcgcagcg |
253 |
Q |
| |
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|||||| ||| |||| ||||| || |||||||||| ||||||||||||| | || || ||| ||| ||| || ||||| |||| | || |
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| T |
9336599 |
cgcaaatattgcttgctaaatggaatatagtgcagaacgtgactcagaatgttagaacaacaaacaattgtgacaggagcaaacaagcactaataaaacg |
9336500 |
T |
|
| Q |
254 |
tgacttccagtgtagcatggatgatagtttctttcgaaattgtgacagaacaggttatggaggctgcattcgtagtagggaaggtgactttgtgaaggct |
353 |
Q |
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||| |||||||| | | |||||| |||| |||||| ||||| ||||||||| ||||||| ||||| |||||||||| |||||| || ||| |||||||| |
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| T |
9336499 |
tgagttccagtgcaacgtggatgttagtatctttcaaaattatgacagaacgggttatgcaggct-aattcgtagtaaggaaggcgagtttatgaaggct |
9336401 |
T |
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| Q |
354 |
tggacaggttggatgcagcctgagatgcaagtgtatgagggagaggccgttgcattgcagactgtcatgaggttggtccagacaatgggagtatcaag |
451 |
Q |
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| T |
9336400 |
tggactggtggaatacaaccgaagatgcaattgcatgagggataagtcattgcattgctaactttcatgaacttaattcaggcaatgggagtatcaag |
9336303 |
T |
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