View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14863_low_13 (Length: 244)

Name: NF14863_low_13
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14863_low_13
NF14863_low_13
[»] chr3 (19 HSPs)
chr3 (1-228)||(2758684-2758911)
chr3 (9-226)||(2818035-2818252)
chr3 (11-228)||(2789838-2790055)
chr3 (8-217)||(2806738-2806947)
chr3 (8-228)||(2856251-2856471)
chr3 (8-228)||(2748475-2748695)
chr3 (73-228)||(2768611-2768766)
chr3 (8-228)||(2796838-2797058)
chr3 (8-228)||(2839041-2839261)
chr3 (101-228)||(5412477-5412604)
chr3 (186-228)||(2755699-2755741)
chr3 (117-166)||(22104280-22104329)
chr3 (78-162)||(30990142-30990226)
chr3 (110-180)||(22621766-22621836)
chr3 (117-174)||(21945190-21945247)
chr3 (117-166)||(22178974-22179023)
chr3 (110-166)||(21936703-21936759)
chr3 (117-169)||(22631320-22631372)
chr3 (117-169)||(22636357-22636409)
[»] scaffold0691 (1 HSPs)
scaffold0691 (14-228)||(6593-6807)
[»] chr1 (1 HSPs)
chr1 (89-180)||(34975040-34975131)


Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Original strand, 2758684 - 2758911
Alignment:
Q  1 caaaggcgagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaa 100  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758684 caaatgcgagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaa 2758783  T
Q  101 agatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2758784 agatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaata 2758883  T
Q  201 agaacatgggtgaagcatatgagagaag 228  Q
    ||||||||||||||||||||||||||||    
T  2758884 agaacatgggtgaagcatatgagagaag 2758911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 9 - 226
Target Start/End: Original strand, 2818035 - 2818252
Alignment:
Q  9 agtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttct 108  Q
    ||||||||||||||||||||||||  ||||||||||   |||||||| ||  | || || | | ||||||| ||||| ||||||||||||| |||||| |    
T  2818035 agtgaaatggcagaaactgcagtatcatcagccttgtcggaagtgtttcagttcctaaaagaagaaacaaagcttctgagaggtgtacacagagattttt 2818134  T
Q  109 tagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacatg 208  Q
     |||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||||||||||| ||  ||||||| ||||||||||||||    
T  2818135 cagacatcaaagatgaactagaaagcatccaagtcttcctcaaagatgcagatagaagggcagcagatgaagcggacgccaatgatggaataagaacatg 2818234  T
Q  209 ggtgaagcatatgagaga 226  Q
    |||||||||  |||||||    
T  2818235 ggtgaagcaagtgagaga 2818252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 2789838 - 2790055
Alignment:
Q  11 tgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttctta 110  Q
    |||||||||||||||||||||| |||  | | |||| ||||||||  || | || || | | |||||||||| || || ||||| ||||||||||| |||    
T  2789838 tgaaatggcagaaactgcagtattatttgtcctgggggaagtgttggaattcctaaaagaagaaacaaatctcctgagtggtgtgcacaaagatttttta 2789937  T
Q  111 gacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacatggg 210  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||| || |||||||||||||| |||||||| ||||||||||| ||||    
T  2789938 gacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatataagagctgcagatgaagcagacaccaatgatggaataagaacttggg 2790037  T
Q  211 tgaagcatatgagagaag 228  Q
    |||||||  |||||||||    
T  2790038 tgaagcagctgagagaag 2790055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 8 - 217
Target Start/End: Original strand, 2806738 - 2806947
Alignment:
Q  8 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 107  Q
    ||||||||||||||||||||||||| |||  ||| | |  |||||||||| | | || || | | ||||||||||||||| ||||||||||| ||| ||     
T  2806738 gagtgaaatggcagaaactgcagtattatttgcccttgatgaagtgttccgattcctaaaagaagaaacaaatcttctaaaaggtgtacacacagaattt 2806837  T
Q  108 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 207  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| ||||| |    
T  2806838 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagatagaagagcagcagatgaagcagacacaaatgatggaattagaactt 2806937  T
Q  208 gggtgaagca 217  Q
    |||| |||||    
T  2806938 gggtaaagca 2806947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 2856471 - 2856251
Alignment:
Q  8 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 107  Q
    |||| |||||||||||||||||||| | |  ||| |||| |||||||||||  | || || | | ||||||||||| | ||||||||||||| ||||||     
T  2856471 gagttaaatggcagaaactgcagtattgtttgccctgggggaagtgttccagttcctaaaagaagaaacaaatcttttgagaggtgtacacagagatttt 2856372  T
Q  108 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 207  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| | |||||| || ||||||||||| | |||||| ||||||||||| |    
T  2856371 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacataagggctgcggatgaagcagacatcaatgatggaataagaactt 2856272  T
Q  208 gggtgaagcatatgagagaag 228  Q
    ||||||||||  |||||||||    
T  2856271 gggtgaagcagctgagagaag 2856251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 2748475 - 2748695
Alignment:
Q  8 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 107  Q
    |||||||||||||||||||||||||   |  | | |||| |||||||||||  | || || | | ||||||||||||| ||| ||||||||| ||||||     
T  2748475 gagtgaaatggcagaaactgcagtatcgtttgtcctgggggaagtgttccagttcctaaaagaagaaacaaatcttctgagaagtgtacacagagatttt 2748574  T
Q  108 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 207  Q
    | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| || ||||||||||| || || || ||||||||||| |    
T  2748575 tcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacactaacgatggaataagaactt 2748674  T
Q  208 gggtgaagcatatgagagaag 228  Q
    ||||||||||  |||||||||    
T  2748675 gggtgaagcagctgagagaag 2748695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 228
Target Start/End: Original strand, 2768611 - 2768766
Alignment:
Q  73 aaacaaatcttctaagaggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagc 172  Q
    |||||||||| || || |||||||||| |||||| | ||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||| ||    
T  2768611 aaacaaatctgctgagtggtgtacacagagatttttcagacatcaaagatgaacttgagagcattcaagtcttcctcaaagatgcagacagaagggctgc 2768710  T
Q  173 agatgaagcagaaaccaatgaaggaataagaacatgggtgaagcatatgagagaag 228  Q
     ||||||||||| ||||| || ||||||||||| |||||||||||  |||||||||    
T  2768711 ggatgaagcagacaccaacgatggaataagaacttgggtgaagcagctgagagaag 2768766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 228
Target Start/End: Original strand, 2796838 - 2797058
Alignment:
Q  8 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 107  Q
    ||||||||||||||||||| ||||| |||  ||| ||||  |||||||  || | || || | | |||||||||| || ||  |||| |||||||||||     
T  2796838 gagtgaaatggcagaaacttcagtattatttgccctggggaaagtgtttgaattcctaaaagaagaaacaaatctgctgagtcgtgtgcacaaagatttt 2796937  T
Q  108 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 207  Q
    | |||||||| |||||||||||| ||||||||| | ||||||||||||||||||| ||| || ||||||||| | || |||||||| ||||||||||| |    
T  2796938 tcagacatcacagatgaacttgagagcattcaagttttcctcaaagatgcagatacaagagctgcagatgaaaccgacaccaatgatggaataagaactt 2797037  T
Q  208 gggtgaagcatatgagagaag 228  Q
    ||||||||||| |||||||||    
T  2797038 gggtgaagcatctgagagaag 2797058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 228
Target Start/End: Complemental strand, 2839261 - 2839041
Alignment:
Q  8 gagtgaaatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttc 107  Q
    |||| |||||||||| ||||||||| | |  ||| | || ||||||||| || | || || | | ||||||||||||| ||||||||||||| ||||||     
T  2839261 gagttaaatggcagagactgcagtattgtttgccctaggggaagtgttcaaattcctaaaagaagaaacaaatcttctgagaggtgtacacagagatttt 2839162  T
Q  108 ttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacat 207  Q
    | ||| ||||||||||||||||| | ||||| | ||||||||||||||||||| |||||||| || ||||||||||| | ||| || ||||||||||| |    
T  2839161 tcagatatcaaagatgaacttgagatcattctagtcttcctcaaagatgcagacagaagggctgcggatgaagcagacatcaacgatggaataagaactt 2839062  T
Q  208 gggtgaagcatatgagagaag 228  Q
    ||||||||||  |||||||||    
T  2839061 gggtgaagcagctgagagaag 2839041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 101 - 228
Target Start/End: Original strand, 5412477 - 5412604
Alignment:
Q  101 agatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaata 200  Q
    |||||| | |||||||||||||||||| |||| |||||||  |||||||||||||||||| | |||||| ||||||||||| ||  ||||||| ||||||    
T  5412477 agatttttcagacatcaaagatgaactagaaatcattcaatccttcctcaaagatgcagacaaaagggctgcagatgaagcggacgccaatgatggaata 5412576  T
Q  201 agaacatgggtgaagcatatgagagaag 228  Q
    ||||||||||||||||||||||||||||    
T  5412577 agaacatgggtgaagcatatgagagaag 5412604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 186 - 228
Target Start/End: Original strand, 2755699 - 2755741
Alignment:
Q  186 accaatgaaggaataagaacatgggtgaagcatatgagagaag 228  Q
    |||||||| ||||||||||| ||||||||||||||||||||||    
T  2755699 accaatgatggaataagaacttgggtgaagcatatgagagaag 2755741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 22104280 - 22104329
Alignment:
Q  117 aaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag 166  Q
    |||||||||||||||||||| |||  ||||||||||||||| ||||||||    
T  22104280 aaagatgaacttgaaagcatccaagccttcctcaaagatgctgatagaag 22104329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 30990226 - 30990142
Alignment:
Q  78 aatcttctaagaggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagata 162  Q
    ||||| ||||||||||| ||||| || || | ||| || ||||||||||||||||||||||||  ||| || |||||||| ||||    
T  30990226 aatctgctaagaggtgttcacaaggaattttcagatattaaagatgaacttgaaagcattcaagcctttcttaaagatgctgata 30990142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 180
Target Start/End: Complemental strand, 22621836 - 22621766
Alignment:
Q  110 agacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaag 180  Q
    |||||| |||||||||||||||||||| |||  |||||| || ||||| |||||||| || |||| |||||    
T  22621836 agacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaagagctgcaggtgaag 22621766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 21945190 - 21945247
Alignment:
Q  117 aaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcag 174  Q
    ||||||||||||||||||||||||   |||||||| ||||| |||| ||| |||||||    
T  21945190 aaagatgaacttgaaagcattcaagcattcctcaaggatgctgataaaagagcagcag 21945247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 166
Target Start/End: Original strand, 22178974 - 22179023
Alignment:
Q  117 aaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag 166  Q
    ||||||||| |||||||||| |||  ||||||||||||||| ||||||||    
T  22178974 aaagatgaatttgaaagcatccaagccttcctcaaagatgctgatagaag 22179023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 166
Target Start/End: Original strand, 21936703 - 21936759
Alignment:
Q  110 agacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaag 166  Q
    |||||| |||||||||||||||||||| |||  |||||| || ||||| ||||||||    
T  21936703 agacattaaagatgaacttgaaagcatccaagccttccttaaggatgctgatagaag 21936759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 22631372 - 22631320
Alignment:
Q  117 aaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggc 169  Q
    ||||||||||||||||| ||| || ||||| |||| ||||| |||||||||||    
T  22631372 aaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggc 22631320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 22636409 - 22636357
Alignment:
Q  117 aaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggc 169  Q
    ||||||||||||||||| ||| || ||||| |||| ||||| |||||||||||    
T  22636409 aaagatgaacttgaaagaattgaagtcttcatcaacgatgcggatagaagggc 22636357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0691 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0691
Description:

Target: scaffold0691; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 14 - 228
Target Start/End: Complemental strand, 6807 - 6593
Alignment:
Q  14 aatggcagaaactgcagtaatatcagccttgggagaagtgttccaacttcttaaggtaaaaacaaatcttctaagaggtgtacacaaagatttcttagac 113  Q
    ||||||||||||||||||| | |  ||| | |||||| |||||||| | || ||   | ||||||||||||| ||||||||||||| ||||||   ||||    
T  6807 aatggcagaaactgcagtattgtttgccctcggagaattgttccaattcctaaaaaaagaaacaaatcttctgagaggtgtacacacagattttacagac 6708  T
Q  114 atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaagcagaaaccaatgaaggaataagaacatgggtga 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||| || ||||| ||||||||||| |||||||    
T  6707 atcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagacagaaaggctgcagatgaagcagacactaatgatggaataagaacttgggtga 6608  T
Q  214 agcatatgagagaag 228  Q
    |||||||||| ||||    
T  6607 agcatatgagggaag 6593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 180
Target Start/End: Original strand, 34975040 - 34975131
Alignment:
Q  89 aggtgtacacaaagatttcttagacatcaaagatgaacttgaaagcattcaaatcttcctcaaagatgcagatagaagggcagcagatgaag 180  Q
    |||||| |||||||| ||   |||||| ||| ||||||| ||||||||||||  ||||||||||||| | |||||||| || |||| |||||    
T  34975040 aggtgttcacaaagaatttgcagacattaaatatgaactcgaaagcattcaagccttcctcaaagattctgatagaagagctgcagctgaag 34975131  T

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