View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_low_15 (Length: 237)
Name: NF14863_low_15
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 118; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 2e-60
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 33246374 - 33246519
Alignment:
| Q |
18 |
tctcttaatttgtaatcccatttttctcgatgagatttcctctaagctctcatnnnnnnnntctcttttccaataaatataatatgtgctttctaagaca |
117 |
Q |
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| T |
33246374 |
tctcttaatttgtaatcccatttttctcgatgagatttcctctaagctctcataaaaaaaatctcttttccaatatatataatatgtgctttctaagaca |
33246473 |
T |
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| Q |
118 |
ctttttgcagatttgtttattcctcaatataagaccacttacaaac |
163 |
Q |
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| T |
33246474 |
ctttttgcagatttgtttattcctcaatataagaccacttacaaac |
33246519 |
T |
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Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 33247671 - 33247731
Alignment:
| Q |
159 |
caaacttattaaagagaaatatgtggaaaatgaaaattagacgacaaaggacatagcacat |
219 |
Q |
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| T |
33247671 |
caaacttattaaagagaaatatgtagaaaatgaaaattagacgacaaaggacataacacat |
33247731 |
T |
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