View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_low_6 (Length: 396)
Name: NF14863_low_6
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 7 - 378
Target Start/End: Complemental strand, 32024001 - 32023632
Alignment:
| Q |
7 |
gtgagatgaacaatgatgtaacaaataatcctattgtgtatgatgataaaatatcatgatgttatatagacaaatctaaaattgggaaattttaaatgga |
106 |
Q |
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| T |
32024001 |
gtgaaatggacaatgatgtaacaaataatcctattgtgtatggtgataaaatatcatgatattatatagacaaatctaaagttgggaaattttaaatgga |
32023902 |
T |
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| Q |
107 |
taaataaaatgaattgcagttgtctaccnnnnnnnntgtgaattgtattgagatagatgtgaatgtatattacttttccaaggagtgaaaataccgagtt |
206 |
Q |
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| T |
32023901 |
taaataaagtgaattgcagttgtctatcaaaaaaaa-gtgaattgtattgagatagatgtgaatgtatattacttttccaaggagtgaaaataccgagtt |
32023803 |
T |
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| Q |
207 |
tttaatnnnnnnnntaaatttcacaagcaaagacttccatgtgaatgtaacaaaaacaaagtcacaaatcataagagttagtatttgtagttgcaggtag |
306 |
Q |
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|||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | | |
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| T |
32023802 |
tttaataaaaaaac-aaatttcataagcaaagacttccttgtgaatgtaacaaaaacaaagtcacaaatcataagagatagtatttgtagttgcacgcgg |
32023704 |
T |
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| Q |
307 |
ataatatcctattcaaaaataaaaatttaacattatttatactcgataacgtttaaatgaaatgacataaat |
378 |
Q |
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| |||||||||||||||||||||||||||| ||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
32023703 |
ttgatatcctattcaaaaataaaaatttaactttatttatattcgataacgcttaaataaaatgacataaat |
32023632 |
T |
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