View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14863_low_8 (Length: 322)
Name: NF14863_low_8
Description: NF14863
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14863_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 45732891 - 45732611
Alignment:
| Q |
1 |
ttgcaagacaacaagttggtttatttcttttccaatctcattttcttaagttttcacgtgtaggacatgtttggattcacttatttaagtttattcccta |
100 |
Q |
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| T |
45732891 |
ttgcaagacaacaagttggtttatttcttttccaatctcattttcttaagttttcacgtgtaggacatgtttggattcacttatttaagtttattcccta |
45732792 |
T |
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| Q |
101 |
acataatcattttggataccgtttgtgggaacttatagggataatttacgacatgttcatatgatgttttcagcttatttccattaagctctcgaggata |
200 |
Q |
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| T |
45732791 |
acataatcattttggataccgtttatgggaacttatagaaataatttacgacatgttcatatgatgttttcagcttatttcca-taagctctcgaggata |
45732693 |
T |
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| Q |
201 |
tcttatatggaaaccgtttacttttatgttatttcttgttgcagaaatgacttacacataaacacttattgatgcatgttta |
282 |
Q |
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| T |
45732692 |
tcttatatggaaactgtttacttttatgctatttcttgttgcagaaatgacttacacataaacacttattgatacatgttta |
45732611 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 129 - 322
Target Start/End: Complemental strand, 45738167 - 45737970
Alignment:
| Q |
129 |
gaacttatagggataatttacgacatgttcatatgatgttttcagcttatttccattaagctctc----gaggatatcttatatggaaaccgttt-actt |
223 |
Q |
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| T |
45738167 |
gaacttatagaaataatttacgacaagctcataagatgttttcagcttatttcca-taagctctcaaggaaggatagcttatatggaaacagtttgactt |
45738069 |
T |
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| Q |
224 |
ttatgttatttcttgttgcagaaatgacttacacataaacacttattgatgcatgtttatgttatacatgtttagttaagttatttatccaaacaaaac |
322 |
Q |
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| T |
45738068 |
tagtgttatttcttgttgtaggaatgacttatacataagcatttattgatacacgtttatgttataagcgctcaattaagttatttatccaaacaaaac |
45737970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 287 - 322
Target Start/End: Complemental strand, 45732621 - 45732586
Alignment:
| Q |
287 |
atacatgtttagttaagttatttatccaaacaaaac |
322 |
Q |
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| T |
45732621 |
atacatgtttagttaagttatttatccaaacaaaac |
45732586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 45738361 - 45738317
Alignment:
| Q |
1 |
ttgcaagacaacaagttggtttatttcttttccaatctcattttc |
45 |
Q |
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| T |
45738361 |
ttgcaagacaacaagttggtttatttcttttcttaactcattttc |
45738317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 184
Target Start/End: Original strand, 8469371 - 8469412
Alignment:
| Q |
143 |
aatttacgacatgttcatatgatgttttcagcttatttccat |
184 |
Q |
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| T |
8469371 |
aatttatgacatgttcataagttgttttcagcttatttccat |
8469412 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Original strand, 7694011 - 7694066
Alignment:
| Q |
150 |
gacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttat |
206 |
Q |
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| T |
7694011 |
gacatgttcataagttgttttcagcttatttcca-taaactctccaggataacttat |
7694066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 207
Target Start/End: Complemental strand, 20672819 - 20672763
Alignment:
| Q |
150 |
gacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttata |
207 |
Q |
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| T |
20672819 |
gacatgttcataagctgttttcagcttattttca-taagctctccaggatagcttata |
20672763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 36638816 - 36638761
Alignment:
| Q |
150 |
gacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttat |
206 |
Q |
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| T |
36638816 |
gacatgttcataagcttttttcagcttatttcca-taagctctctaggataacttat |
36638761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 206
Target Start/End: Complemental strand, 24785274 - 24785219
Alignment:
| Q |
150 |
gacatgttcatatgatgttttcagcttatttccattaagctctcgaggatatcttat |
206 |
Q |
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| T |
24785274 |
gacatgttcataagttgtttttagcttatttaca-taagctctcgaggatagcttat |
24785219 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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