View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14864_low_1 (Length: 1040)

Name: NF14864_low_1
Description: NF14864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14864_low_1
NF14864_low_1
[»] chr6 (39 HSPs)
chr6 (19-332)||(4587107-4587420)
chr6 (450-686)||(4559154-4559390)
chr6 (691-858)||(4559418-4559585)
chr6 (879-1026)||(4560209-4560356)
chr6 (691-858)||(4566276-4566443)
chr6 (691-858)||(4573290-4573457)
chr6 (519-656)||(4573130-4573267)
chr6 (21-172)||(4558602-4558755)
chr6 (536-656)||(4566133-4566253)
chr6 (902-1026)||(4573926-4574050)
chr6 (406-493)||(4587494-4587581)
chr6 (21-171)||(4572443-4572594)
chr6 (21-159)||(4612229-4612369)
chr6 (19-102)||(4507386-4507469)
chr6 (24-95)||(4258753-4258824)
chr6 (24-102)||(3173483-3173561)
chr6 (21-102)||(4618778-4618859)
chr6 (170-237)||(4558861-4558928)
chr6 (21-80)||(4569547-4569606)
chr6 (21-95)||(4471391-4471465)
chr6 (21-95)||(4488774-4488848)
chr6 (879-998)||(4567935-4568041)
chr6 (21-95)||(4575932-4576006)
chr6 (21-95)||(4603587-4603661)
chr6 (21-95)||(4627627-4627701)
chr6 (21-102)||(4565506-4565587)
chr6 (21-102)||(4594487-4594568)
chr6 (192-236)||(4572758-4572802)
chr6 (21-95)||(4623784-4623858)
chr6 (21-102)||(4513549-4513630)
chr6 (25-80)||(4517821-4517876)
chr6 (37-95)||(4255398-4255456)
chr6 (21-95)||(4265634-4265708)
chr6 (21-95)||(4462684-4462758)
chr6 (21-95)||(4497822-4497896)
chr6 (22-80)||(4562140-4562198)
chr6 (21-102)||(4482342-4482423)
chr6 (570-640)||(4615168-4615237)
chr6 (530-583)||(4591385-4591438)
[»] chr8 (4 HSPs)
chr8 (570-660)||(16684943-16685033)
chr8 (699-836)||(16684742-16684881)
chr8 (21-95)||(1675998-1676072)
chr8 (21-102)||(20862380-20862461)
[»] chr3 (1 HSPs)
chr3 (21-103)||(1282910-1282992)
[»] scaffold0475 (1 HSPs)
scaffold0475 (21-102)||(2301-2382)
[»] scaffold0199 (1 HSPs)
scaffold0199 (21-95)||(1235-1309)
[»] scaffold0288 (1 HSPs)
scaffold0288 (21-102)||(2021-2102)
[»] chr7 (1 HSPs)
chr7 (21-95)||(3088222-3088296)
[»] chr5 (1 HSPs)
chr5 (21-95)||(24104572-24104646)
[»] chr4 (1 HSPs)
chr4 (524-591)||(37214216-37214283)


Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 39)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 332
Target Start/End: Original strand, 4587107 - 4587420
Alignment:
Q  19 cgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctg 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4587107 cgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctg 4587206  T
Q  119 agtttttgtttgaatgttgagcaaagggaagccaatggtttaatagagataaagtgaccacattttgttataaaaggaaaacaaattttcattaaaaagt 218  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||    
T  4587207 agtttgtgtttgaattttgagcaaagggaagccaatggtttaatagagataaagtgaccactttttgttataaaaggaaatcaatttttcattaaaaagt 4587306  T
Q  219 ttatagcacaaacttaagcctatatttgtactgcggtgacgagaattgatttgaatg--tttgtttaacaaaattactttgtagttgaaagtgcgttgaa 316  Q
    ||||||||||||||||||  | |||||||  ||||||||||||||||||||||||||  ||||||||||||||||| | | | ||| |||||||||||||    
T  4587307 ttatagcacaaacttaagtatgtatttgt-ttgcggtgacgagaattgatttgaatgaatttgtttaacaaaattagtgtttggtt-aaagtgcgttgaa 4587404  T
Q  317 cgtgatttatatttat 332  Q
     ||||| |||||||||    
T  4587405 tgtgatatatatttat 4587420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 450 - 686
Target Start/End: Original strand, 4559154 - 4559390
Alignment:
Q  450 atttaagaacacacaaccatagggtctgactaggcttatctaagatccctaatgtaaccaacttgcatctaataataactaacttataactatcttgaaa 549  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  4559154 atttgagaacacataaccatagggtctgactaggcttatctaagatccctaatgtaaccaacttgcatctaatcataactaacttataactatcttgaaa 4559253  T
Q  550 aatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca 649  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4559254 aatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttca 4559353  T
Q  650 tatgctttagtcnnnnnnnnggaaaatcttcatatgc 686  Q
    ||||||||||||        |||||||||||||||||    
T  4559354 tatgctttagtcaaaaaaaaggaaaatcttcatatgc 4559390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 691 - 858
Target Start/End: Original strand, 4559418 - 4559585
Alignment:
Q  691 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 790  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4559418 agtttcaaaattgaactagatgacacttttattcaagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 4559517  T
Q  791 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 858  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4559518 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac 4559585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 879 - 1026
Target Start/End: Original strand, 4560209 - 4560356
Alignment:
Q  879 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaatgctttcaaatcaatctatgcaacaagaagc 978  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4560209 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaaactttgaattcaaatgctttcaaatcaatctatgcaacaagaagc 4560308  T
Q  979 tgacaaagtagtgcagagaaattttataaacgagctaaagaagaatat 1026  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  4560309 tgacaaagtagtgcagagaaattttataaacgagctaaagaagaatat 4560356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 128; E-Value: 1e-65
Query Start/End: Original strand, 691 - 858
Target Start/End: Original strand, 4566276 - 4566443
Alignment:
Q  691 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 790  Q
    |||||||||||||||||||| | ||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||    
T  4566276 agtttcaaaattgaactagaaggcacttctattcaagtaagtataagatagttctgacatcaaagatttttgttgtacaaagaaaataattatgtccact 4566375  T
Q  791 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 858  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  4566376 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattagacatcac 4566443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 120; E-Value: 7e-61
Query Start/End: Original strand, 691 - 858
Target Start/End: Original strand, 4573290 - 4573457
Alignment:
Q  691 agtttcaaaattgaactagatgacacttttattctagtaagtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccact 790  Q
    |||||||||||||||||||| ||||||| ||||| ||||   |  | ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  4573290 agtttcaaaattgaactagaagacacttctattcaagtataagatatatagttctgacatcaaagatttttgttgtacaaagaaaataattatgaccact 4573389  T
Q  791 tatttattttataatagtctattggttattattttccatgcttgaatgagtcagacattggacatcac 858  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  4573390 tatttattttataatagtctattggctattattttccatgcttgaatcagtcagacattggacatcac 4573457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 519 - 656
Target Start/End: Original strand, 4573130 - 4573267
Alignment:
Q  519 taataataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattc 618  Q
    |||| |||||||||||||||||||||| || ||||  |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4573130 taatcataactaacttataactatcttaaacaatactaaactaatttcaacaaatatgaaactatatctaacacatacttgcatggaattgcaaccattc 4573229  T
Q  619 agtagaaagatattatcaaacaaaatcttcatatgctt 656  Q
    ||||||||||||||||||||||||||||||||||||||    
T  4573230 agtagaaagatattatcaaacaaaatcttcatatgctt 4573267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 4e-53
Query Start/End: Original strand, 21 - 172
Target Start/End: Original strand, 4558602 - 4558755
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgag 120  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||| ||||    
T  4558602 aaggtgaagaagttttgctagtttcaacaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgag 4558701  T
Q  121 tttt--tgtttgaatgttgagcaaagggaagccaatggtttaatagagataaag 172  Q
    ||||  |||||||||||||||| |||||||||||||||||||||| ||||||||    
T  4558702 tttttgtgtttgaatgttgagctaagggaagccaatggtttaataaagataaag 4558755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 536 - 656
Target Start/End: Original strand, 4566133 - 4566253
Alignment:
Q  536 taactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 635  Q
    ||||||||||  ||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4566133 taactatcttccaaaatattaaactaattttaacaaatctgaaactacatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatc 4566232  T
Q  636 aaacaaaatcttcatatgctt 656  Q
    |||||||||||||||||||||    
T  4566233 aaacaaaatcttcatatgctt 4566253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 902 - 1026
Target Start/End: Original strand, 4573926 - 4574050
Alignment:
Q  902 tgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaatgctttcaaatcaatctatgcaacaagaagctgacaaagtagtgcagagaaatt 1001  Q
    |||||||||||||||||| | | | ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||    
T  4573926 tgaatgtttttgaatgtttaaataagaaagaacctttgaattcaaatgctttcaaatcaatctatgcaaccagaagctgacaatgtagtgcagagaaatt 4574025  T
Q  1002 ttataaacgagctaaagaagaatat 1026  Q
    ||||||| || | ||||||||||||    
T  4574026 ttataaaagatcaaaagaagaatat 4574050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 406 - 493
Target Start/End: Original strand, 4587494 - 4587581
Alignment:
Q  406 ccttagctttaaataacgagcggtttaaaggcaaaatcaattccatttaagaacacacaaccatagggtctgactaggcttatctaag 493  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4587494 ccttagctttaaataacgagcggcttaaaggcaaaatcaattccatttaagaacacacaaccatagggtctgactaggcttatctaag 4587581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 21 - 171
Target Start/End: Original strand, 4572443 - 4572594
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgag 120  Q
    ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||||  ||||    
T  4572443 aaggtgaagaaattttgctagttgcaacaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatcactcattattgag 4572542  T
Q  121 tttt--tgtttgaatgttgagcaaagggaagccaatggtttaatagagataaa 171  Q
    ||||  |||||||||||||||| || |||| |||||| ||||||| |||||||    
T  4572543 tttttgtgtttgaatgttgagctaa-ggaaaccaatgttttaataaagataaa 4572594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 21 - 159
Target Start/End: Complemental strand, 4612369 - 4612229
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgag 120  Q
    ||||||||||||||| |||||||| |  ||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||    
T  4612369 aaggtgaagaagttttgctagtttgattaatggattgatatggccttgaactggatatggaattaacactgcatgtggttttgaatcactcatttctgag 4612270  T
Q  121 tttttgtttgaatgttgagcaaaggg--aagccaatggttt 159  Q
    ||| ||||||||||||| | | ||||  |||||||||||||    
T  4612269 tttgtgtttgaatgttgtgtacagggataagccaatggttt 4612229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 19 - 102
Target Start/End: Original strand, 4507386 - 4507469
Alignment:
Q  19 cgaaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||  |||| |||| || ||||||||||| ||||||    
T  4507386 cgaaggtgaagaagcttagctagtttgaacaatggattgatatggccttgagttggatatggaatcaacacagcatgtggtttt 4507469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 24 - 95
Target Start/End: Complemental strand, 4258824 - 4258753
Alignment:
Q  24 gtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  4258824 gtgaagaagcttagctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatg 4258753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 24 - 102
Target Start/End: Original strand, 3173483 - 3173561
Alignment:
Q  24 gtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    |||||| ||||| |||||||||||||||| |||||||||||||||||||||| ||||  ||||||| ||||| ||||||    
T  3173483 gtgaagtagttttgctagtttcaacaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt 3173561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4618778 - 4618859
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||    
T  4618778 aaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt 4618859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 170 - 237
Target Start/End: Original strand, 4558861 - 4558928
Alignment:
Q  170 aagtgaccacattttgttataaaaggaaaacaaattttcattaaaaagtttatagcacaaacttaagc 237  Q
    |||| ||||| |||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  4558861 aagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttattgaacaaacttaagc 4558928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 4569547 - 4569606
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgg 80  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||| |||| ||||    
T  4569547 aaggtgaagaagttttgctagtttcaataatggattgatatggccttgaagtggatatgg 4569606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4471391 - 4471465
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||||||| || |||||||||||||||| |||||||||||||||| ||||| |||| || || ||||||||    
T  4471391 aaggtgaagaagctttgctagtttcaacaatgcattgatatggccttgagctggacatggaatcaatacagcatg 4471465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 4488848 - 4488774
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||||||||||||| ||||  ||||||| |||||    
T  4488848 aaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgaactggaaatggtgttaacactgcatg 4488774  T

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Target: chr6; HSP #22
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 879 - 998
Target Start/End: Original strand, 4567935 - 4568041
Alignment:
Q  879 acaatttgcatttgcatcatcggtgaatgtttttgaatgttcatagaggaaagaacctttgaattcaaatgctttcaaatcaatctatgcaacaagaagc 978  Q
    |||||||||||||||| |||| |||||||||||||||||||||    ||||||||||||| |          ||||||||||||||||||||||||||||    
T  4567935 acaatttgcatttgcaacatcagtgaatgtttttgaatgttca---cggaaagaacctttaa----------tttcaaatcaatctatgcaacaagaagc 4568021  T
Q  979 tgacaaagtagtgcagagaa 998  Q
    ||| |  |||||||||||||    
T  4568022 tgatagtgtagtgcagagaa 4568041  T

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Target: chr6; HSP #23
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4575932 - 4576006
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| ||||| |||| ||||||||||| |||||||||||||||||||||| ||||  ||||||| |||||    
T  4575932 aaggtgaagcagttttgctattttcaacaatgcattgatatggccttgaactggaaatggagttaacactgcatg 4576006  T

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Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4603587 - 4603661
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||  ||||| ||||||||||||| |||||||||||||||||||| |||| |||| || |||||||||||    
T  4603587 aaggtgaaatagttttgctagtttcaacattggattgatatggccttgaagtggatatggaatcaacacagcatg 4603661  T

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Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4627627 - 4627701
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| | ||| |||||| ||||||||||||||||||||||||||| |||| |||| || |||||||||||    
T  4627627 aaggtgaagtaattttgctagtatcaacaatggattgatatggccttgaagtggaaatggaatcaacacagcatg 4627701  T

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Target: chr6; HSP #26
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4565506 - 4565587
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||| ||| || ||||||||||| ||||||    
T  4565506 aaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaaatggagctggaatcaacacagcatgtggtttt 4565587  T

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Target: chr6; HSP #27
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4594487 - 4594568
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    ||||||||||||||| || ||||| ||||||||||| ||||| ||||||| ||||| ||| || ||||||||||| ||||||    
T  4594487 aaggtgaagaagttttgcaagtttgaacaatggatttatatgtccttgaagtggagctggaatcaacacagcatgtggtttt 4594568  T

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Target: chr6; HSP #28
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 4572758 - 4572802
Alignment:
Q  192 aaggaaaacaaattttcattaaaaagtttatagcacaaacttaag 236  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  4572758 aaggaaaacaatttttcattaaaaagtttatagcacaaacttaag 4572802  T

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Target: chr6; HSP #29
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4623784 - 4623858
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||| |||||| || |||||||| ||||||||||||||||| |||||||||||| |||  || |||||||||||    
T  4623784 aaggtaaagaagctttgctagtttgaacaatggattgatatgaccttgaactggatatgcaatcaacacagcatg 4623858  T

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Target: chr6; HSP #30
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 4513630 - 4513549
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    ||||||||| ||||| |||| | | |||| |||||||||||||||||||| |||| |||| || ||||||||||| ||||||    
T  4513630 aaggtgaagtagttttgctaatctgaacattggattgatatggccttgaagtggatatggaatcaacacagcatgtggtttt 4513549  T

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Target: chr6; HSP #31
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 80
Target Start/End: Original strand, 4517821 - 4517876
Alignment:
Q  25 tgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgg 80  Q
    ||||||||||| |||||||| ||||| ||||||||||||||||||| |||| ||||    
T  4517821 tgaagaagttttgctagttttaacaacggattgatatggccttgaagtggatatgg 4517876  T

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Target: chr6; HSP #32
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 37 - 95
Target Start/End: Complemental strand, 4255456 - 4255398
Alignment:
Q  37 gctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||| || ||| ||||||||||||||||||||||| |||| || |||||||||||    
T  4255456 gctagtttgaataatagattgatatggccttgaactggatatggaatcaacacagcatg 4255398  T

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Target: chr6; HSP #33
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 4265708 - 4265634
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||||||| ||  |||| || ||||||| ||||||||||||||||| ||||| ||| || |||||||||||    
T  4265708 aaggtgaagaagctttcctagattgaacaatgcattgatatggccttgaaatggagctggaatcaacacagcatg 4265634  T

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Target: chr6; HSP #34
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 4462684 - 4462758
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| |||||  ||||||||||||||| |||||||||||||||   |||| |||| || |||||||||||    
T  4462684 aaggtgaagtagttttcctagtttcaacaatgcattgatatggccttgggatggacatggaatcaacacagcatg 4462758  T

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Target: chr6; HSP #35
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Complemental strand, 4497896 - 4497822
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||| | |||  |||||||||||||||||||||||||||||| || |||| ||||  ||||||| |||||    
T  4497896 aaggtgaagtaattttcctagtttcaacaatggattgatatggccttaaattggaaatggagttaacactgcatg 4497822  T

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Target: chr6; HSP #36
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 22 - 80
Target Start/End: Original strand, 4562140 - 4562198
Alignment:
Q  22 aggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgg 80  Q
    |||||||| ||||| |||| ||||||||||| ||||||||| |||||||||||| ||||    
T  4562140 aggtgaagcagttttgctattttcaacaatgcattgatatgaccttgaactggaaatgg 4562198  T

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Target: chr6; HSP #37
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 4482342 - 4482423
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    ||||||||| |||||  ||| ||||||||||| |||||||||||||||| ||||| ||||  | ||||| ||||| ||||||    
T  4482342 aaggtgaagtagttttcctattttcaacaatgcattgatatggccttgagctggaaatggagtcaacactgcatgtggtttt 4482423  T

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Target: chr6; HSP #38
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 570 - 640
Target Start/End: Original strand, 4615168 - 4615237
Alignment:
Q  570 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaaca 640  Q
    |||||| ||||||||||||| | |||| ||||||| ||| |||||||||||| | ||||||| ||||||||    
T  4615168 aaatctcaaactatatctaaaaaatacatgcatggcattccaaccattcagt-ggaagatatcatcaaaca 4615237  T

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Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 530 - 583
Target Start/End: Original strand, 4591385 - 4591438
Alignment:
Q  530 aacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactat 583  Q
    |||||||||||||| | |||||||| ||||||||| |||||||| | |||||||    
T  4591385 aacttataactatcctaaaaaatatgaaactaattctaacaaatatcaaactat 4591438  T

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Target: chr8 (Bit Score: 91; Significance: 1e-43; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 570 - 660
Target Start/End: Complemental strand, 16685033 - 16684943
Alignment:
Q  570 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt 660  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16685033 aaatctgaaactatatctaacacatacttgcatggaattgcaaccattcagtagaaagatattatcaaacaaaatcttcatatgctttagt 16684943  T

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Target: chr8; HSP #2
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 699 - 836
Target Start/End: Complemental strand, 16684881 - 16684742
Alignment:
Q  699 aattgaactagatgacacttttattctagta--agtgtaagatagttctgacatcaaagatttttgttgtacaaagaaaataatcatgaccacttattta 796  Q
    |||||||||||| ||||||| ||||| ||||  ||| ||||| | |||| |||||||| | ||||||||||||||||||||||| ||| |||||||||||    
T  16684881 aattgaactagaagacacttgtattccagtacaagtataagacacttctcacatcaaacacttttgttgtacaaagaaaataattatgtccacttattta 16684782  T
Q  797 ttttataatagtctattggttattattttccatgcttgaa 836  Q
    |||||| ||||||| |||| ||||||||||||||||||||    
T  16684781 ttttatgatagtcttttggctattattttccatgcttgaa 16684742  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 1675998 - 1676072
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  1675998 aaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatg 1676072  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 20862461 - 20862380
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    ||||||||| ||||| |||||||| |||| |||||||||||| ||||||| |||| ||||  ||||||| ||||| ||||||    
T  20862461 aaggtgaagtagttttgctagttttaacattggattgatatgaccttgaagtggatatggagttaacactgcatgtggtttt 20862380  T

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Target: chr3 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 21 - 103
Target Start/End: Original strand, 1282910 - 1282992
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttg 103  Q
    ||||||||| ||||| |||||||| |||||||||||||||||||||||| ||||| |||| || ||||||||||| |||||||    
T  1282910 aaggtgaagtagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatcaacacagcatgtggttttg 1282992  T

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Target: scaffold0475 (Bit Score: 50; Significance: 4e-19; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 21 - 102
Target Start/End: Original strand, 2301 - 2382
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    |||||||||||| || |||||||| || ||||||||||||||||||||||||||| |||| || ||||||||||| ||||||    
T  2301 aaggtgaagaagctttgctagtttgaataatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttt 2382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 47; Significance: 3e-17; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 1235 - 1309
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||| |||||| |||||||| |||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  1235 aaggtgaataagttttgctagtttgaacaatggattgatatggccttgagctggatatggaatgaacacagcatg 1309  T

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Target: scaffold0288 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 21 - 102
Target Start/End: Complemental strand, 2102 - 2021
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 102  Q
    |||||||||||| || |||||||| |||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||    
T  2102 aaggtgaagaagctttgctagtttgaacaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt 2021  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 3088222 - 3088296
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    ||||||||||||||| |||||||| ||||||||||| ||||| ||||||| |||| |||| || |||||||||||    
T  3088222 aaggtgaagaagttttgctagttttaacaatggatttatatgaccttgaagtggatatggaatcaacacagcatg 3088296  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 95
Target Start/End: Original strand, 24104572 - 24104646
Alignment:
Q  21 aaggtgaagaagtttagctagtttcaacaatggattgatatggccttgaactggagatgggattaacacagcatg 95  Q
    |||||||||||| ||  ||||||| ||||||| ||||||||| ||||||| ||||| ||| || |||||||||||    
T  24104572 aaggtgaagaagctttcctagtttgaacaatgcattgatatgaccttgaaatggagctggaatcaacacagcatg 24104646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 524 - 591
Target Start/End: Complemental strand, 37214283 - 37214216
Alignment:
Q  524 ataactaacttataactatcttgaaaaatatcaaactaattttaacaaatctgaaactatatctaaca 591  Q
    ||||||||||| |||||| ||| || |||||| |||||||| |||||||| | ||||||| |||||||    
T  37214283 ataactaacttttaactaccttaaacaatatccaactaattctaacaaatatcaaactatctctaaca 37214216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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