View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14864_low_10 (Length: 212)

Name: NF14864_low_10
Description: NF14864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14864_low_10
NF14864_low_10
[»] chr7 (3 HSPs)
chr7 (11-69)||(41124333-41124391)
chr7 (151-200)||(41124476-41124525)
chr7 (81-110)||(41124406-41124435)
[»] chr2 (2 HSPs)
chr2 (18-65)||(288949-288995)
chr2 (18-65)||(18426285-18426331)
[»] chr3 (1 HSPs)
chr3 (25-66)||(13284582-13284622)


Alignment Details
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 11 - 69
Target Start/End: Original strand, 41124333 - 41124391
Alignment:
Q  11 aaagttgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa 69  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41124333 aaagatgaaagctaatcaaaatagttatttcattttcaagcataaaaattatttttcaa 41124391  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 151 - 200
Target Start/End: Original strand, 41124476 - 41124525
Alignment:
Q  151 ctccaatgaggttgatttttatactattttgtaacagttactagtattat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  41124476 ctccaatgaggttgatttttatactattttgtaacagttactaatattat 41124525  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 81 - 110
Target Start/End: Original strand, 41124406 - 41124435
Alignment:
Q  81 ataataacctacacacagtaactagaacat 110  Q
    ||||||||||||||||||||||||||||||    
T  41124406 ataataacctacacacagtaactagaacat 41124435  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Complemental strand, 288995 - 288949
Alignment:
Q  18 aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt 65  Q
    ||||||||| ||||||| |||||||||||||| |||||||||||||||    
T  288995 aaagctaatgaaaatagctatttcattttcaa-cataaaaattatttt 288949  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 65
Target Start/End: Original strand, 18426285 - 18426331
Alignment:
Q  18 aaagctaatcaaaatagttatttcattttcaagcataaaaattatttt 65  Q
    |||| |||||||| |||||||||||||||||| |||||||||||||||    
T  18426285 aaagttaatcaaactagttatttcattttcaa-cataaaaattatttt 18426331  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 13284582 - 13284622
Alignment:
Q  25 atcaaaatagttatttcattttcaagcataaaaattattttt 66  Q
    |||||||||||||||||| |||||| ||||||||||||||||    
T  13284582 atcaaaatagttatttcactttcaa-cataaaaattattttt 13284622  T

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