View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14864_low_2 (Length: 617)
Name: NF14864_low_2
Description: NF14864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14864_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 282; Significance: 1e-158; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 226 - 610
Target Start/End: Complemental strand, 44444627 - 44444242
Alignment:
| Q |
226 |
cacatggatagtacttgtttaattttgaaaaccatagtactaaattttagaagaagagaattgcgggtttagactcaaacaaacaccttgtcgnnnnnnn |
325 |
Q |
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| T |
44444627 |
cacatggatagtacttgtttaattttgaaaaccatagtactaaattttagaaaaagaaaattgcgggtttagactcaaacaaacaccttgtcgaaaaaaa |
44444528 |
T |
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| Q |
326 |
taaatcaaacaaacactaaaataaaggagtagaaatataacattataaactcttatcaagactggcatgttcagatattcaaattagaaaaccttattcc |
425 |
Q |
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| T |
44444527 |
taaatcaaacaaacactaaaataaaggagtagaaatataacattataaactcttatcaagactggcatgttcagatattcaaattagaaaaccttattcc |
44444428 |
T |
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| Q |
426 |
accttctcttatagcaataacagaaagnnnnnnnnnnnttaaagtatataaaaaagtgaaattagagactggaaattatagctcaaaattatgaagttct |
525 |
Q |
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| T |
44444427 |
accttctcttatagcaataacagaaag-aaaaaaaaaattaaagtatataaaaaagtgaaattagagactggaaattatagctcaaaattatgaagttct |
44444329 |
T |
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| Q |
526 |
tatac--nnnnnnnnnacaaaagttcttatacttatgtggttaagaattaaagatgttaaaattgaaaactaatttttcttgagtat |
610 |
Q |
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| T |
44444328 |
tatactttttttttttacaaaagttcttatacttatgtggttaagaattaaagatgttaaaattgaaaactaatttttcttgagtat |
44444242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 18 - 74
Target Start/End: Complemental strand, 44444837 - 44444781
Alignment:
| Q |
18 |
taaccattgtaatttcaagaggtgtaattcgaactctcttgaaaatactctaaaatg |
74 |
Q |
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| T |
44444837 |
taaccattgtaatttcaagaggtgtaattcgaactctcttgaaaatactctaaaatg |
44444781 |
T |
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