View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14864_low_4 (Length: 514)
Name: NF14864_low_4
Description: NF14864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14864_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 19 - 499
Target Start/End: Original strand, 7774591 - 7775071
Alignment:
| Q |
19 |
cagagaacaagagaaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaagatggaattttacttttagtcttagcttaac |
118 |
Q |
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| T |
7774591 |
cagaaaacaagagaaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaagatggaattttacttttagtcttagcttaac |
7774690 |
T |
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| Q |
119 |
cattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagtaagaatgaaacataaaatcagcaaaatgcataaattcagatatgatg |
218 |
Q |
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| T |
7774691 |
cattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagtaagaatgaaacataaaatcagcaaaatgcataaattcagatatgatg |
7774790 |
T |
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| Q |
219 |
gtgaaagatgcaacaccatatcacaattatattcatttcaattcttacatcaactttaattcactgtggactaatatttctaagaaatttagatcttatt |
318 |
Q |
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| T |
7774791 |
gtgaaagatgcaacaccatatcacaattatattcatttcaattcttacatcaactttaattcactgtggactaatatttctaagaaatttagatcttatt |
7774890 |
T |
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| Q |
319 |
agtgtcaaatttgttagtaactataattgcgttataattactaacaatttcatcaacaaattagtctttagtgtgtgctattaaaccattagcacacagt |
418 |
Q |
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| T |
7774891 |
agtgtcaaatttgttagtaattataattgcgttataattactaacaatttcatcaacaaattagtctttagtgtgtgctattaaaccattagcacacagt |
7774990 |
T |
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| Q |
419 |
ccttaaagaaaaacagattactccaatacggtacaaatatcataataagttacatgaacaagaaagctggtgtctcatttg |
499 |
Q |
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| T |
7774991 |
ccttaaagaaaaacagattactccaatacggtacaaatatcataataagttacatgaacaagaaagctggtgtctcatttg |
7775071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 7779415 - 7779487
Alignment:
| Q |
32 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaagatggaattttactttt |
104 |
Q |
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| T |
7779415 |
aaagatcgattcatcgcagtctgacaaaggccgcaacagtgctcccaagaaatcaagatggaattttactttt |
7779487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 435 - 499
Target Start/End: Original strand, 7769439 - 7769503
Alignment:
| Q |
435 |
attactccaatacggtacaaatatcataataagttacatgaacaagaaagctggtgtctcatttg |
499 |
Q |
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| T |
7769439 |
attactccaatacggtacaaatatgataataagttatatgaacaagaaaactggtctttcatttg |
7769503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Original strand, 7779521 - 7779583
Alignment:
| Q |
106 |
gtcttagcttaaccattttgattctatgtctaattctttgcatcattgatgaaatctgttgga |
168 |
Q |
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| T |
7779521 |
gtctttgcttaaccattttgattatgtttctaattctttgcatcatttatgaaatctgttgga |
7779583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 208
Target Start/End: Original strand, 7768822 - 7768911
Alignment:
| Q |
115 |
taaccattttgattctatgtctaattctttgcatcattgatgaaatctgttggaagtaagaatgaaacataaaatcagcaaaatgcataaattc |
208 |
Q |
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| T |
7768822 |
taaccattttgattctatgtctaattccttacatcattgatgaagtatgttgg----tagagtgaaacatagaatcagcaaaatgtatgaattc |
7768911 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 7768391 - 7768447
Alignment:
| Q |
32 |
aaagatggattcgtcgcagtctgacaaaggcagcgacagtgctcccaagaaatcaag |
88 |
Q |
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| T |
7768391 |
aaagattgattcatcgcagtctaacaaaggcagcaacagtgcttccaggaaatcaag |
7768447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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