View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14864_low_5 (Length: 455)
Name: NF14864_low_5
Description: NF14864
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14864_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 158 - 414
Target Start/End: Original strand, 24905963 - 24906201
Alignment:
| Q |
158 |
gtttctgattttgtacaaaaacaaaattaatgttgcataagatatatcatatggctcatatataataaactacaaaaactcaagtacttaatacatgata |
257 |
Q |
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| T |
24905963 |
gtttctgattttgtacaaaaacaaaattaatgttgcataagatatatcatatggctcatatataataaactacaaaaactcaagtactt----------- |
24906051 |
T |
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| Q |
258 |
tagtattgaaccatagatcaaaatattgtgctatatgaaagagctagtgctaatttcatgaaacctaacaacttaaggttcaaaagggttattgttgtga |
357 |
Q |
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| T |
24906052 |
-------gaaccatagatcaaaatattgtgctatatgaaagagctagtgctaatttcatgaaacctaacaacttaaggttcaaaagggttattgttgtga |
24906144 |
T |
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| Q |
358 |
tgaagagggtcaggtccggttggaacttctcttgctgaatcttctactgttccaaca |
414 |
Q |
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| T |
24906145 |
tgaagagggtcaggtccagttggaacttctcttgctgaatcttctactgttccaaca |
24906201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 24 - 89
Target Start/End: Original strand, 24905833 - 24905898
Alignment:
| Q |
24 |
gtcttctttcaaaggataaatacaattaccaatgaagccacaaacacatgaactaaaacaactatg |
89 |
Q |
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| T |
24905833 |
gtcttctttcaaaggataaatacaatgaccaatgaagccacaaacacatgaactaaaacaactatg |
24905898 |
T |
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