View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14865_high_2 (Length: 375)

Name: NF14865_high_2
Description: NF14865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14865_high_2
NF14865_high_2
[»] chr4 (15 HSPs)
chr4 (1-359)||(4217160-4217515)
chr4 (62-359)||(3800187-3800484)
chr4 (29-104)||(3985781-3985856)
chr4 (18-104)||(3816390-3816476)
chr4 (1-104)||(3808814-3808917)
chr4 (151-256)||(3956829-3956934)
chr4 (158-317)||(4023766-4023925)
chr4 (27-104)||(3920994-3921066)
chr4 (27-104)||(3934215-3934287)
chr4 (18-103)||(4001088-4001173)
chr4 (27-104)||(3956728-3956805)
chr4 (23-102)||(4008796-4008875)
chr4 (18-64)||(4024021-4024067)
chr4 (152-313)||(3985571-3985732)
chr4 (152-232)||(3816260-3816340)
[»] chr5 (2 HSPs)
chr5 (29-130)||(13396732-13396830)
chr5 (158-229)||(13396628-13396699)


Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 359
Target Start/End: Complemental strand, 4217515 - 4217160
Alignment:
Q  1 tatattgaacttgctttatagtcaagtggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaa 100  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4217515 tatattgaacttgcgttatagtaaagtggaaaagctttggtgtggagtacaggtaattgaatatgtgtctttcagatgaaatttatcttaattcaaggaa 4217416  T
Q  101 ttattgtaaattaagtacttaagcttatatatatcacnnnnnnnnnnnngtgtagccggatctagttaatttaaaagaagttacactatcacattcagga 200  Q
    |||||||||||||| ||||||||||||||||||||||            |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  4217415 ttattgtaaattaactacttaagcttatatatatcacttttttttt---gtgtagccggatctagttaatttaaaagaagttaaactatcacattcagga 4217319  T
Q  201 ttcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatattgaagattgtcctcagttggaaagtgtccatccatctattttct 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4217318 ttcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatattgaagattgtcctcagttggaaagtgtccatccatctattttct 4217219  T
Q  301 gtcctggcaagcttgtgaaactctacttgttcactataagtcactgaatgctgtattgt 359  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4217218 gtcctggcaagcttgtgaaactctacttgttcactataagtcactgaatgctgtattgt 4217160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 62 - 359
Target Start/End: Complemental strand, 3800484 - 3800187
Alignment:
Q  62 tatgtgtctttcagattaaatttatcttaattcaaggaattattgtaaattaagtacttaagcttatatatatcacnnnnnnnnnnnngtgtagccggat 161  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||            ||||||||||||    
T  3800484 tatgtgtctttcagattaaatttatcttaattcaaggaattattgtaaattaactacttaagcttatatacatcacctttttttttt-gtgtagccggat 3800386  T
Q  162 ctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatattgaag 261  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800385 ctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatattgaag 3800286  T
Q  262 attgtcctcagttggaaagtgtccatccatctatttt-ctgtcctggcaagcttgtgaaactctacttgttcactataagtcactgaatgctgtattgt 359  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800285 attgtcctcagttggaaagtgtccatccatctattttcctgtcctggcaagcttgtgaaactctacttgttcactataagtcactgaatgctgtattgt 3800187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 29 - 104
Target Start/End: Complemental strand, 3985856 - 3985781
Alignment:
Q  29 gaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattat 104  Q
    |||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  3985856 gaaaagctttggtgtggagtacaggtaattgaatatgtgtctatcagattaaatttatcaaaattcaaggaattat 3985781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 18 - 104
Target Start/End: Complemental strand, 3816476 - 3816390
Alignment:
Q  18 atagtcaagtggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattat 104  Q
    |||||| |||||||||||||||||||||||| |||||||||| |||| | |||| || |||||||||||||||||||||||||||||    
T  3816476 atagtctagtggaaaagctttggtgtggagtgcaggtaattggatatttatcttccaaattaaatttatcttaattcaaggaattat 3816390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 3808917 - 3808814
Alignment:
Q  1 tatattgaacttgctttatagtcaagtggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaa 100  Q
    |||||||||||||  | ||||| || |||||||||||||| ||||||| |||||||||| ||| ||||||| || |||||||||||||||||||| ||||    
T  3808917 tatattgaacttgtatgatagtaaaatggaaaagctttggcgtggagtgcaggtaattggatacgtgtcttccaaattaaatttatcttaattcagggaa 3808818  T
Q  101 ttat 104  Q
    ||||    
T  3808817 ttat 3808814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 151 - 256
Target Start/End: Original strand, 3956829 - 3956934
Alignment:
Q  151 tgtagccggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtatt 250  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||||| |||||| | ||||  |||||||||||||   |||||| ||||||||    
T  3956829 tgtagcaggatctggttaatttaaaagaagttacactctcacattcaggattcctgaaggtgataccagacttttcaaaagccacaaatcttaatgtatt 3956928  T
Q  251 gcatat 256  Q
    | ||||    
T  3956929 gaatat 3956934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 158 - 317
Target Start/End: Complemental strand, 4023925 - 4023766
Alignment:
Q  158 ggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattgcatatt 257  Q
    ||||||||||||||||||||| |||| ||| ||  ||||   |||| |||||||||||||| ||||||||||||||   ||||| || |||||| ||||     
T  4023925 ggatctagttaatttaaaagaggttagactctcctattcgaaattcctgaaggagttacctgacttttcaaaagctactaatcttaaagtattgaatatg 4023826  T
Q  258 gaagattgtcctcagttggaaagtgtccatccatctattttctgtcctggcaagcttgtg 317  Q
    | | |||||| | | ||| |||| ||||||||||||||||||| || || ||||||||||    
T  4023825 gcacattgtcataatttgaaaagcgtccatccatctattttctctcttgacaagcttgtg 4023766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 3920994 - 3921066
Alignment:
Q  27 tggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattat 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||     ||||||||||||||||||||| |||||||    
T  3920994 tggaaaagctatggtgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattat 3921066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 3934215 - 3934287
Alignment:
Q  27 tggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattat 104  Q
    |||||||||| ||||||||||| |||||||||||||||||||||     ||||||||||||||||||||| |||||||    
T  3934215 tggaaaagctatggtgtggagtacaggtaattgaatatgtgtct-----attaaatttatcttaattcaatgaattat 3934287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 4001173 - 4001088
Alignment:
Q  18 atagtcaagtggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaatta 103  Q
    |||||| ||||||||| |||||||||||||| |||||||||||||||||||| | |||||| | ||  | ||||||||||||||||    
T  4001173 atagtcgagtggaaaatctttggtgtggagtgcaggtaattgaatatgtgtcatccagatttatttcttgttaattcaaggaatta 4001088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 27 - 104
Target Start/End: Original strand, 3956728 - 3956805
Alignment:
Q  27 tggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattat 104  Q
    ||||||| |||||||||||||| ||| |||||||||| |||||||  |||||||||||| ||||| |||| |||||||    
T  3956728 tggaaaaactttggtgtggagtgcagataattgaatacgtgtcttctagattaaatttaccttaaatcaaagaattat 3956805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 4008875 - 4008796
Alignment:
Q  23 caagtggaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaatt 102  Q
    ||||| ||||||||||||| ||||||  |||||||||| ||||| |||| | ||||||||||  ||| ||||||||||||    
T  4008875 caagtagaaaagctttggtatggagtgaaggtaattgactatgtatcttcctgattaaatttcgcttgattcaaggaatt 4008796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 64
Target Start/End: Complemental strand, 4024067 - 4024021
Alignment:
Q  18 atagtcaagtggaaaagctttggtgtggagttcaggtaattgaatat 64  Q
    |||||| |||||||||||||||||||||||| ||||||| |||||||    
T  4024067 atagtctagtggaaaagctttggtgtggagtgcaggtaagtgaatat 4024021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 152 - 313
Target Start/End: Complemental strand, 3985732 - 3985571
Alignment:
Q  152 gtagccggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagctgaaaatctgaatgtattg 251  Q
    ||||| ||||||| |||||||||||||||||||||| ||   ||||| |  | |||||||||||||  |||||||||||||   |||||| || ||||||    
T  3985732 gtagcaggatctaattaatttaaaagaagttacactctctttttcagaagacctgaaggagttaccagacttttcaaaagccataaatcttaaggtattg 3985633  T
Q  252 catattgaagattgtcctcagttggaaagtgtccatccatctattttctgtcctggcaagct 313  Q
     ||||  ||  ||||  |  ||||  ||| ||||||||||||||||||| || || ||||||    
T  3985632 aatatccaacgttgttatatgttgacaagcgtccatccatctattttctctcttgacaagct 3985571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 232
Target Start/End: Complemental strand, 3816340 - 3816260
Alignment:
Q  152 gtagccggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaaagc 232  Q
    ||||| ||||||| |||||||||||||||||| ||| ||  |||||   || || |||||||||||  |||||||||||||    
T  3816340 gtagcaggatctaattaatttaaaagaagttagactctcttattcaatgttattaaaggagttaccagacttttcaaaagc 3816260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 130
Target Start/End: Complemental strand, 13396830 - 13396732
Alignment:
Q  29 gaaaagctttggtgtggagttcaggtaattgaatatgtgtctttcagattaaatttatcttaattcaaggaattattgtaaattaagtacttaagcttat 128  Q
    |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||   |||||||| ||||||| |||||    
T  13396830 gaaaagctttggtgtggagtacaggtaattgaatacgtgtctttcagattaaatttatcttaattcaaggaatta---taaattaattacttaatcttat 13396734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 158 - 229
Target Start/End: Complemental strand, 13396699 - 13396628
Alignment:
Q  158 ggatctagttaatttaaaagaagttacactatcacattcaggattcttgaaggagttacctaacttttcaaa 229  Q
    ||||||||||||||||||| |||||||||| |  ||||||  || | |||||||||||||  ||||||||||    
T  13396699 ggatctagttaatttaaaacaagttacactctgccattcaaaatacctgaaggagttaccagacttttcaaa 13396628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University