View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14865_high_3 (Length: 237)

Name: NF14865_high_3
Description: NF14865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14865_high_3
NF14865_high_3
[»] chr4 (2 HSPs)
chr4 (1-179)||(42677336-42677514)
chr4 (196-229)||(42677520-42677553)
[»] chr1 (2 HSPs)
chr1 (1-73)||(48968805-48968873)
chr1 (196-229)||(15496097-15496130)
[»] chr2 (3 HSPs)
chr2 (196-229)||(6705719-6705752)
chr2 (196-229)||(40900403-40900436)
chr2 (120-168)||(40900464-40900512)


Alignment Details
Target: chr4 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 42677336 - 42677514
Alignment:
Q  1 tactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgt 100  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677336 tactatgcacaattatttgctttttgaacacatatatactacatgttttcgtggtaccttcagaacatgttcacgccatgtttgttttttaagtgtttgt 42677435  T
Q  101 accgattctattatgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa 179  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42677436 accgattctattgtgaaccacgctagccatcaattgaaaaatattgtaaggggaggttaattcatacagctttgtctaa 42677514  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 42677520 - 42677553
Alignment:
Q  196 atgtgacggtgagttttgtttgtggtgatgatgt 229  Q
    ||||||||||||||||||||||||||||||||||    
T  42677520 atgtgacggtgagttttgtttgtggtgatgatgt 42677553  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 48968873 - 48968805
Alignment:
Q  1 tactatgcacaattatttgctttgtgaacacatatatactacatgttttcgtggtaccttcagaacatgttca 73  Q
    ||||||||||||||||||||||| |||||||     ||||||| ||||| |||||||||||||||||||||||    
T  48968873 tactatgcacaattatttgctttttgaacac----ctactacaggtttttgtggtaccttcagaacatgttca 48968805  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 15496130 - 15496097
Alignment:
Q  196 atgtgacggtgagttttgtttgtggtgatgatgt 229  Q
    ||||| ||||||||||||||||||||||||||||    
T  15496130 atgtggcggtgagttttgtttgtggtgatgatgt 15496097  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 6705752 - 6705719
Alignment:
Q  196 atgtgacggtgagttttgtttgtggtgatgatgt 229  Q
    ||||| ||||||||||||||||||||||||||||    
T  6705752 atgtggcggtgagttttgtttgtggtgatgatgt 6705719  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 196 - 229
Target Start/End: Complemental strand, 40900436 - 40900403
Alignment:
Q  196 atgtgacggtgagttttgtttgtggtgatgatgt 229  Q
    ||||| ||||||||||||||||||||||||||||    
T  40900436 atgtggcggtgagttttgtttgtggtgatgatgt 40900403  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 40900512 - 40900464
Alignment:
Q  120 acgctagccatcaattgaaaaatattgtaaggggaggttaattcataca 168  Q
    |||||||||||||||||  |||||||| || |||||||| |||||||||    
T  40900512 acgctagccatcaattgggaaatattgcaaagggaggttcattcataca 40900464  T

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