View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14865_low_1 (Length: 454)
Name: NF14865_low_1
Description: NF14865
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14865_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 13 - 441
Target Start/End: Original strand, 5849598 - 5850027
Alignment:
| Q |
13 |
acaatatccttcttccattctttatgatcaatggtgcctactccatttctacatttaacgttatcgctatatcaaagtttttgcttttgacctgcccact |
112 |
Q |
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| T |
5849598 |
acaatatccttcttccattctttatgaccaatggtgcctactccatttctacatttaactttatcgctatatcaaagtttttgcttttgacctgcccact |
5849697 |
T |
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| Q |
113 |
tagttttttgtaggcacacaaaattgattctcgttcctaatcacaatgtcaactattttcattgattttcttttaagagtgtatagattcctaattacaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
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| T |
5849698 |
tagttttttgtaggcacacaaaattgattctcgttcctaagcacaatgtcaactattttcattgattttcttttaagagtgtacagattcctagttacaa |
5849797 |
T |
|
| Q |
213 |
aaag-aattatactataatgaactaacttctttaaccacatccatttacaaaaatttgagaactcatgcttatttttcatttcattcaaacacatatgga |
311 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5849798 |
aaaggaattatactataatgaactaacttctttaaccacatccatttacaaaaatttgagaactcatgcttatttttcatttcatccaaacacatatgga |
5849897 |
T |
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| Q |
312 |
gcaactctgacttaattatttgataatgtactcgagttatacaatgtgttgctttgaggcaacgacataatcacattcattaattacctatttgatctat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5849898 |
gcaactctgacttaattatttgataatgtactcgagttatacaatgtgttgctttcaggcaacgacataatcacattcattaattacctatttgatctat |
5849997 |
T |
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| Q |
412 |
gtcatagagattcaactgtctaacacaatc |
441 |
Q |
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| T |
5849998 |
gtcatagagattcaactgtctaacacaatc |
5850027 |
T |
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