View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_high_16 (Length: 233)
Name: NF14866_high_16
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_high_16 |
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| [»] scaffold0140 (1 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 36351 - 36564
Alignment:
| Q |
1 |
ttgtttatggttttgttggttgtgtcttgggcaatgttcatttcatatatgaagatgtagtgtaatgactcagttcaaatgttaaatcaatgttatgaag |
100 |
Q |
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| T |
36351 |
ttgtttatggttatgttggttgtattttgggcaatgttcatttcatatatgaagatgtagtgtaatgactcggttcaaatgttaaatcaatgttatgaag |
36450 |
T |
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| Q |
101 |
tttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaataaatgaaatgaagtttgtttgtcatgctattgttgtctgcttgttcattactt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
36451 |
tttatgacattgttgattgtaatgaaaagaagttgtgtttcttgaatcaatgaaatgaagtttgtttgtcatgctattgttgtatgcttgttcattagtt |
36550 |
T |
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| Q |
201 |
tgtgattcactgtt |
214 |
Q |
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|||||||||||||| |
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| T |
36551 |
tgtgattcactgtt |
36564 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 16 - 99
Target Start/End: Original strand, 23573673 - 23573754
Alignment:
| Q |
16 |
ttggttgtgtcttgggcaatgttcatttcatatatgaagatgtagtgtaatgactcagttcaaatgttaaatcaatgttatgaa |
99 |
Q |
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|||||||| |||||||||||||||||| ||||| ||| |||||||||| || ||| ||||||||||||||||||||||||||| |
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| T |
23573673 |
ttggttgtatcttgggcaatgttcattacatatctgacgatgtagtgtgat--ctcggttcaaatgttaaatcaatgttatgaa |
23573754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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