View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_high_18 (Length: 223)
Name: NF14866_high_18
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 141; Significance: 4e-74; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 56 - 220
Target Start/End: Complemental strand, 9886945 - 9886781
Alignment:
| Q |
56 |
caagtctgcaattgatattcctgatgttaagtctgcaattgatttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaat |
155 |
Q |
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| T |
9886945 |
caagtctgcaattgatattcatgatgttaagtctgcaattgatttccatcgaattgaaaggaatgaaaatgatttattctgttttttcctcttccggaat |
9886846 |
T |
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| Q |
156 |
tcctaaccggttggtcaatgggtttagcatccaccaatggtggctcctcttcttctttctccttc |
220 |
Q |
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| T |
9886845 |
ttctaaccggttcgtcaatgggtttagcatccaccaatggtggctcctcttcttctttctccttc |
9886781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 98 - 220
Target Start/End: Original strand, 9866551 - 9866673
Alignment:
| Q |
98 |
tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg |
197 |
Q |
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||||||| ||||||||| |||||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||| | |
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| T |
9866551 |
tttccattgaattcaaaggaatgaaaatgatttattctgttttatcctcttccggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg |
9866650 |
T |
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| Q |
198 |
gctcctcttcttctttctccttc |
220 |
Q |
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| T |
9866651 |
gctcctcttcttctttctccttc |
9866673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 220
Target Start/End: Complemental strand, 9873878 - 9873757
Alignment:
| Q |
98 |
tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg |
197 |
Q |
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| T |
9873878 |
tttccatcgaattcaaaggaatgaaaatgattttattt-ttttttcctctttcggaattcctaaccggttcgtcaatgggtttagcatcctccaatggcg |
9873780 |
T |
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| Q |
198 |
gctcctcttcttctttctccttc |
220 |
Q |
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|||||||||||| |||||||||| |
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| T |
9873779 |
gctcctcttcttatttctccttc |
9873757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 98 - 213
Target Start/End: Original strand, 9873185 - 9873299
Alignment:
| Q |
98 |
tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg |
197 |
Q |
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|||| |||||||| ||| ||||||||||||||||||||| |||||||| |||||||| |||||| | || | ||||||||||| ||| | |||||| |
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| T |
9873185 |
tttctatcgaatttaaaagaatgaaaatgatttattttg-tttttcctattccggaaaccctaactgtttcgccaatgggtttaacattcttcaatggca |
9873283 |
T |
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| Q |
198 |
gctcctcttcttcttt |
213 |
Q |
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||| |||||||||||| |
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| T |
9873284 |
gctgctcttcttcttt |
9873299 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 60
Target Start/End: Original strand, 9887131 - 9887165
Alignment:
| Q |
26 |
tgtggaagaatatgaaccttgtgttatacacaagt |
60 |
Q |
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| T |
9887131 |
tgtggaagaatatgaaccttgtgttatacacaagt |
9887165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 9867184 - 9867136
Alignment:
| Q |
171 |
caatgggtttagcatccaccaatggtggctcctcttcttctttctcctt |
219 |
Q |
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||||||||||||||||| ||||||| || | |||||||||||||||||| |
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| T |
9867184 |
caatgggtttagcatcctccaatggcggatgctcttcttctttctcctt |
9867136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 98 - 212
Target Start/End: Complemental strand, 40956727 - 40956613
Alignment:
| Q |
98 |
tttccatcgaattcaaatgaatgaaaatgatttattttgttttttcctcttccggaattcctaaccggttggtcaatgggtttagcatccaccaatggtg |
197 |
Q |
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|||||||| |||||||| |||||||||||||| ||||||||||||||||||| |||| |||||| |||| | ||||||||||||||||| |||| || | |
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| T |
40956727 |
tttccatcaaattcaaaggaatgaaaatgattgattttgttttttcctcttctggaaaccctaactggtttgccaatgggtttagcatcctccaaaggcg |
40956628 |
T |
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| Q |
198 |
gctcctcttcttctt |
212 |
Q |
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||||||||||||||| |
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| T |
40956627 |
gctcctcttcttctt |
40956613 |
T |
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