View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14866_high_3 (Length: 444)
Name: NF14866_high_3
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 401; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Original strand, 36458207 - 36458634
Alignment:
| Q |
1 |
gtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaaaccaaataacacccctgcg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
36458207 |
gtaataacgttgattccaaaacaaagaataccaatatatttttacaattttctttttctaatcctaaactgtcacttctaacccaaataacacccctgcg |
36458306 |
T |
|
| Q |
101 |
tgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458307 |
tgcatagtgattccattgttgacaaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttccga |
36458406 |
T |
|
| Q |
201 |
ccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcatatcatagacattccgtccaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
|
|
| T |
36458407 |
ccgcccggctgaccttgagtttagtggcaacacgttccagaccaccatataagttgcagaatttgatcatatacttcatatcatagacattctgtcc-aa |
36458505 |
T |
|
| Q |
301 |
atattt-cgttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaa |
399 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458506 |
atatttgtgttaagatgcttaagaattcctccaatcgagacggtaagtaattctgagtcaaaatcttaactagatacccaaaatcatatgagctgtgaaa |
36458605 |
T |
|
| Q |
400 |
tgtaacccaagaaactccactgttgacta |
428 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
36458606 |
tgtaacccaagaaactccactgttgacta |
36458634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 198
Target Start/End: Original strand, 40874742 - 40874816
Alignment:
| Q |
124 |
aaaataaatgtccttcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
198 |
Q |
| |
|
||||||| | ||| |||| |||||||| || ||||| ||||||||||||||||| | ||||||||||| ||||| |
|
|
| T |
40874742 |
aaaataagtatccatcattttcttaaatgcatgccacgtcaacaaactatctgatccagcttgatgagactttcc |
40874816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 40871658 - 40871718
Alignment:
| Q |
138 |
tcatcttcttaaaagcttgccatgtcaacaaactatctgacgcggcttgatgagagtttcc |
198 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||| | |||||||| || ||||| |
|
|
| T |
40871658 |
tcattttcttaaatgcatgccatgtcaacaaactatctgatccagcttgatgcgactttcc |
40871718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University