View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_high_8 (Length: 347)
Name: NF14866_high_8
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 328
Target Start/End: Complemental strand, 37267758 - 37267442
Alignment:
| Q |
18 |
atgaagacatatttataccatattttattggcaaataattttccctacataagttaatcacctactatatggtgaaaccttttcacgatggaagttgaag |
117 |
Q |
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| T |
37267758 |
atgaagatatatttataccatattttattggcaaataattttccctacataagttaatcacctactatatggtgaaaccttttcacgatggaagttgaag |
37267659 |
T |
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| Q |
118 |
ttttttcatacatccaacacctatgttttctgctacacgtccacgtcc------ccacttgtccagtatgttggaagttgaattttgtaccccacttacc |
211 |
Q |
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| T |
37267658 |
ttttttcatacatccaacacctatgttttctgctacacgtccacgtccacgtccccacttgtccagtatgttggaagttgaattttgtaccccacttacc |
37267559 |
T |
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| Q |
212 |
tcatattcttccccactcgatcacaataactatagaaactgctacctcgtacgtcttcttttcttttgtaaagacaagattgaagaagtttagtggtagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37267558 |
tcatattcttccccactcgatcacaataactatagaaactgctacctcgtacgtcttcttttcttttgtaaagacaagattgaagaagtttagtggtagt |
37267459 |
T |
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| Q |
312 |
agagcataattgttttc |
328 |
Q |
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||||||||||||||||| |
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| T |
37267458 |
agagcataattgttttc |
37267442 |
T |
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