View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_10 (Length: 346)
Name: NF14866_low_10
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_10 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 233; Significance: 1e-129; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 346
Target Start/End: Complemental strand, 32199697 - 32199376
Alignment:
| Q |
19 |
attgcctccaccatttctgcacaccatattactacatcattaaaatttcttgaaacaattcattgnnnnnnnctatgtaacaccaaaacccgaattgaag |
118 |
Q |
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| T |
32199697 |
attgcctccaccatttctgcacaccatattactacatcattaaaatttcttgaaacaattcattgaaaaaaactacgtaacaccaaaacccgaattgaag |
32199598 |
T |
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| Q |
119 |
gtgttcattcacacatgtccatgtctgacac-aacacaagtgattacattcgaccacttttattttcttaaattattaccggtgtttacgcggcagtcat |
217 |
Q |
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| T |
32199597 |
gtgttca----cacatgtccatgtctgacaccaacacaagtgattacattcgaccacttttattttcttaaattattaccggtgtttacgcggcagtcat |
32199502 |
T |
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| Q |
218 |
ggtatcagtacttttactaaagtgaagggaagnnnnnnnnnntcaatttagtctctcataattttctcgcggcacaatttagcttcgacaaaaaataaca |
317 |
Q |
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| T |
32199501 |
ggtatcagtacttttactaaagtgaagggaa---aaaaaaaatcaatttagtctctcataattttctcgcggcccaatttagtttcgacaaaaaataaca |
32199405 |
T |
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| Q |
318 |
tcaaaactagtcccacagaaattatttcc |
346 |
Q |
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| T |
32199404 |
tcaaaactagtcccacagaaattatttcc |
32199376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 206
Target Start/End: Complemental strand, 11496043 - 11496009
Alignment:
| Q |
172 |
cacttttattttcttaaattattaccggtgtttac |
206 |
Q |
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| T |
11496043 |
cacttctattttcttaaattattaccggtgtttac |
11496009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 149 - 204
Target Start/End: Original strand, 12976658 - 12976713
Alignment:
| Q |
149 |
caacacaagtgattacattcgaccacttttattttcttaaattattaccggtgttt |
204 |
Q |
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| T |
12976658 |
caacacatgtgattacattcattgacttttattttcttaaattattactggtgttt |
12976713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 13049987 - 13050040
Alignment:
| Q |
151 |
acacaagtgattacattcgaccacttttattttcttaaattattaccggtgttt |
204 |
Q |
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| T |
13049987 |
acacatgtgattacattcattgacttttattttcttaaattattactggtgttt |
13050040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 207
Target Start/End: Original strand, 29360444 - 29360493
Alignment:
| Q |
158 |
tgattacattcgaccacttttattttcttaaattattaccggtgtttacg |
207 |
Q |
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| T |
29360444 |
tgattacattcaatcacttttatattcttaaatcattactggtgtttacg |
29360493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 179 - 207
Target Start/End: Complemental strand, 29587704 - 29587676
Alignment:
| Q |
179 |
attttcttaaattattaccggtgtttacg |
207 |
Q |
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| T |
29587704 |
attttcttaaattattaccggtgtttacg |
29587676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 202
Target Start/End: Original strand, 27403752 - 27403793
Alignment:
| Q |
161 |
ttacattcgaccacttttattttcttaaattattaccggtgt |
202 |
Q |
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| T |
27403752 |
ttacatgcgaccatttctattttcttaaattattaccggtgt |
27403793 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 36895415 - 36895359
Alignment:
| Q |
149 |
caacacaagtgattacattcgaccacttttattttcttaaattattaccggtgttta |
205 |
Q |
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| T |
36895415 |
caacacatgtgattacattcaatcacttatattttatcaaattattacaggtgttta |
36895359 |
T |
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