View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_11 (Length: 342)
Name: NF14866_low_11
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_11 |
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| [»] scaffold0302 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 295; Significance: 1e-166; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 18 - 331
Target Start/End: Original strand, 1236556 - 1236870
Alignment:
| Q |
18 |
catctgtgatccttcatttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcat |
117 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
1236556 |
catctgtgatccttcatttattaacaagtcggctatttgattggcttccttttttatatgaacaaagcccacatccatcaaactctacatgttttttcat |
1236655 |
T |
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| Q |
118 |
tttgttgctcaagaatctcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctt |
217 |
Q |
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| T |
1236656 |
tttgttgctcaagaatttcagattaaatggacacccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctt |
1236755 |
T |
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| Q |
218 |
tcaaccaatattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaaca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1236756 |
tcaaccaatattttctgctgaaaggacaactagactgcaaaaacaattgccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaaca |
1236855 |
T |
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| Q |
317 |
tcggcttcatctcac |
331 |
Q |
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| T |
1236856 |
tcggcttcatctcac |
1236870 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 51 - 329
Target Start/End: Complemental strand, 1183149 - 1182887
Alignment:
| Q |
51 |
tatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaatctcagattaaatggaca |
150 |
Q |
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| T |
1183149 |
tatttgattagcttccctatttatatgaacaaagcccatatccaccaaactctgcat--tttttcattttgttgctcaagaatcttatattacatggaca |
1183052 |
T |
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| Q |
151 |
cccatcactacgccccacccaatgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactag |
250 |
Q |
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| T |
1183051 |
cccatcactacaccccacccaatgt---------------ccaattctatacttctcctacaacctttcaaccaatattttcttttgaaaggaccgctag |
1182967 |
T |
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| Q |
251 |
actgcaaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatctc |
329 |
Q |
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| T |
1182966 |
actgcaaaaagaattgccttaaactcagattcgtttgagtcttttaaaccaattgatgttacaaacatcggcttcatctc |
1182887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 194 - 331
Target Start/End: Complemental strand, 1193956 - 1193818
Alignment:
| Q |
194 |
attctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagcctt |
292 |
Q |
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||||| |||| |||| | ||||||||||||||||||||||| |||| |||||| || |||||||||||||| |||||||| | |||||||||| || ||| |
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| T |
1193956 |
attctatacttatcttacaacctttcaaccaatattttctgttgaatggacaattaaactgcaaaaacaatagccttaaattaagattcattttagtctt |
1193857 |
T |
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| Q |
293 |
ttaaaccaattgatgttgcaaacatcggcttcatctcac |
331 |
Q |
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| T |
1193856 |
ttaacccaattgatgttgcaaacatcggcttcatctcac |
1193818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 173 - 301
Target Start/End: Complemental strand, 897730 - 897601
Alignment:
| Q |
173 |
tgttaagcattttaatgtccaattctgtactaatctaataacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaa-tgccttaa |
271 |
Q |
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||||||||||||| |||||||||||| |||| |||| | ||||||||||||||||||||||| |||||||| ||||| ||||||||||||| || ||||| |
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| T |
897730 |
tgttaagcattttcatgtccaattctatacttatcttacaacctttcaaccaatattttctgttgaaaggaaaactaaactgcaaaaacaattgtcttaa |
897631 |
T |
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| Q |
272 |
actcagattcatttgagccttttaaaccaa |
301 |
Q |
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| T |
897630 |
actcagatttatttgagtcttttaaaccaa |
897601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302 (Bit Score: 83; Significance: 3e-39; HSPs: 2)
Name: scaffold0302
Description:
Target: scaffold0302; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 34 - 172
Target Start/End: Complemental strand, 20329 - 20191
Alignment:
| Q |
34 |
tttattaacaagtcagctatttgattggcttccttttttatatgaacaaagccgacatccatcaaactctacatgttttttcattttgttgctcaagaat |
133 |
Q |
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|||| |||| |||| | ||||||||| |||||||| |||| || ||||||| | |||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
20329 |
tttactaacgagtcggttatttgattagcttccttgtttaaattaacaaagaccacatccatcaaactctgcatgtttttacattttgttgctcaagaat |
20230 |
T |
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| Q |
134 |
ctcagattaaatggacacccatcactacgccccacccaa |
172 |
Q |
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| T |
20229 |
ctcagattaaatgaacacccatcactacaccccacccaa |
20191 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0302; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 20184 - 20067
Alignment:
| Q |
212 |
aacctttcaaccaatattttctgctgaaaggacaactagactgcaaaaacaat-gccttaaactcagattcatttgagccttttaaaccaattgatgttg |
310 |
Q |
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||||||||||||||||||| | |||||||| |||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
20184 |
aacctttcaaccaatatttattt-tgaaaggaaaactagactgcaaaaacaattgccttaaactcagattcatttgagtcttttaaaccaattgatgtca |
20086 |
T |
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| Q |
311 |
caaacatcggcttcatctc |
329 |
Q |
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| T |
20085 |
caaacatcagcttcatctc |
20067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 20256862 - 20256919
Alignment:
| Q |
272 |
actcagattcatttgagccttttaaaccaattgatgttgcaaacatcggcttcatctc |
329 |
Q |
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||||||||||||||||| ||||||| ||||||||||| |||||||| || ||||||| |
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| T |
20256862 |
actcagattcatttgagtcttttaagccaattgatgtcccaaacatcagcctcatctc |
20256919 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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