View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14866_low_12 (Length: 296)
Name: NF14866_low_12
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 89; Significance: 6e-43; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 20073405 - 20073232
Alignment:
| Q |
18 |
atgaagtaagataagttttaacgtgattgat---actacatttttataattaatgtggaatttggacaattttgtttagttggctagtatgtgtggataa |
114 |
Q |
| |
|
|||||||||||||||||| || ||||||||| || |||||||||| ||||||||| |||||||||| |||||||||||||||| || ||||| |||| |
|
|
| T |
20073405 |
atgaagtaagataagtttaaatgtgattgatgatacaacatttttatgattaatgtgaaatttggacacatttgtttagttggctattacgtgtgtataa |
20073306 |
T |
|
| Q |
115 |
gggagtagatgagattaatgtaatc--ccttttatgcttcaaaacctttcatttctattatcggaaactctatt |
186 |
Q |
| |
|
||||||||||||||||||||||||| | |||| | ||||||| |||||||||||||| ||||||||||||||| |
|
|
| T |
20073305 |
gggagtagatgagattaatgtaatcctcttttttttcttcaaagcctttcatttctatcatcggaaactctatt |
20073232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 137 - 273
Target Start/End: Complemental strand, 20083962 - 20083826
Alignment:
| Q |
137 |
atcccttttatgcttcaaaacctttcatttctattatcggaaactctattcttgnnnnnnnatttgattggattttgatgaatggttatcatcaattctc |
236 |
Q |
| |
|
||||||||| | ||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||| |
|
|
| T |
20083962 |
atccctttttttcttcaaagcctttcatttctattatcggaaactctattcttgtttttttatttgattgaattttgatgaatggtgatcattaattctc |
20083863 |
T |
|
| Q |
237 |
tctttactgatctctgaagggcgttttacatttttta |
273 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||| |
|
|
| T |
20083862 |
tctttactgatctctgaagggcgttttacaattttta |
20083826 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 90 - 175
Target Start/End: Original strand, 20081676 - 20081762
Alignment:
| Q |
90 |
ttagttggctagtatgtgtggataagggagtagatgagattaatgtaatccctt-ttatgcttcaaaacctttcatttctattatcg |
175 |
Q |
| |
|
||||||||||| |||||||| |||||||||| ||||||||||||||||||| || || | ||||||| ||||||||||||||||||| |
|
|
| T |
20081676 |
ttagttggctattatgtgtgtataagggagtggatgagattaatgtaatcctttgtttttcttcaaagcctttcatttctattatcg |
20081762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 20081884 - 20081954
Alignment:
| Q |
200 |
ttgattggattttgatgaatggttatcatcaattctctctttactgatctctgaagggcgttttacatttttta |
273 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||| |||| ||||||||| |||||||||||||||||||| |
|
|
| T |
20081884 |
ttgattggattttgatgaatggttatca---attctcactttcttgatctctggagggcgttttacatttttta |
20081954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Complemental strand, 20104008 - 20103950
Alignment:
| Q |
25 |
aagataagttttaacgtgattgatactacatttttataattaatgtggaatttggacaa |
83 |
Q |
| |
|
||||||||||| || |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
20104008 |
aagataagtttaaatgtgattgatactgcatttttataattaatgtgaaatttggacaa |
20103950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 122 - 182
Target Start/End: Complemental strand, 20095876 - 20095815
Alignment:
| Q |
122 |
gatgagattaatgtaatcccttt-tatgcttcaaaacctttcatttctattatcggaaactc |
182 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||| ||||| |||||||||||||||||||| |
|
|
| T |
20095876 |
gatgagattaatgtaatccttttattttcttcaaagcctttgatttctattatcggaaactc |
20095815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 83 - 134
Target Start/End: Complemental strand, 20103048 - 20102997
Alignment:
| Q |
83 |
attttgtttagttggctagtatgtgtggataagggagtagatgagattaatg |
134 |
Q |
| |
|
|||||||||||| | | | |||||||| |||||||||||||||||||||||| |
|
|
| T |
20103048 |
attttgtttagtagtccattatgtgtgtataagggagtagatgagattaatg |
20102997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 26320388 - 26320445
Alignment:
| Q |
82 |
aattttgtttagttggctagtatgtgtggataagggagtagatgagattaatgtaatc |
139 |
Q |
| |
|
||||||| |||||||| || || |||| ||||| ||||||||||||||||||||||| |
|
|
| T |
26320388 |
aattttgattagttggttattacctgtgtataagagagtagatgagattaatgtaatc |
26320445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University