View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_13 (Length: 276)
Name: NF14866_low_13
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 1478881 - 1479129
Alignment:
| Q |
18 |
gaagaagcatgataatagcattaaacacatagatttgattagtaaaataaaagaatttagccatcaatttcgtttaacattagctggtttatagttgtgt |
117 |
Q |
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| T |
1478881 |
gaagaagcatgataatagcattaaacacatagatttgattagtaaaataaaagaatttagccatcaatttcgtttaacattagctggtttatagttgtgt |
1478980 |
T |
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| Q |
118 |
aatgtgttattttccttttacagggtagatggaatgttgatctaacttctctactctttgagtgtttatgtattttatgattcttctttgagatttgaga |
217 |
Q |
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| T |
1478981 |
aatgtgttattttccttttacagggtagatggaatgttgatctaacttctctactctttgagtgtttatgtattttatgattcttctttgagatttgaga |
1479080 |
T |
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| Q |
218 |
tgtgcacattttaatgttattaatgtataataatttatttctccctatg |
266 |
Q |
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| T |
1479081 |
tgtgcacattttaatgttattaatgtataataatttatttctccctatg |
1479129 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 18289918 - 18289954
Alignment:
| Q |
33 |
tagcattaaacacatagatttgattagtaaaataaaa |
69 |
Q |
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| T |
18289918 |
tagcattaaacacatagatttgattagtaaaataaaa |
18289954 |
T |
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