View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14866_low_14 (Length: 262)
Name: NF14866_low_14
Description: NF14866
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14866_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 242; Significance: 1e-134; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34317961 - 34317716
Alignment:
| Q |
1 |
acaagtgtgttaagttcttctccgagtggcctttttggaacttcattccaagagtactttgttggtatgacggagtcaaatactgtatggtttgcttctg |
100 |
Q |
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| T |
34317961 |
acaagtgtgttaagttcttctccgagtggcctttttggaacttcattccaagagtactgtgttggtatgacggagtcaaatactgtatggtttgcttctg |
34317862 |
T |
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| Q |
101 |
attctgcagattcaagagattggttaagacctatctctgaactctttcttatctttggattaggaatgtcactagttgaagctcttcttttttcatgact |
200 |
Q |
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| T |
34317861 |
attctgcagattcaagagattggttaagacctatctctgaactctttcttatctttggattaggaatgtcactagttgaagctcttcttttttcatgact |
34317762 |
T |
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| Q |
201 |
cgtagtatccatttgaatttttaatgtcccgtctgaatatccaaag |
246 |
Q |
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| T |
34317761 |
cgtagtatccatttgaatttttaatgtcccgtctgaatatccaaag |
34317716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 165
Target Start/End: Complemental strand, 26375987 - 26375824
Alignment:
| Q |
1 |
acaagtgtgttaagttcttctccgagtggcctttttggaacttcattccaagagtactttgttggtatgacggagtcaaatactgtatggtttgcttctg |
100 |
Q |
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| T |
26375987 |
acaagtgtgtcacattcttctttgagtggcccttttggaagttcattc-aagaatactgtgttggtatggtggaatcaaaaattgtatggtttgcttctg |
26375889 |
T |
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| Q |
101 |
attctgcagattcaagagattggttaagacctatctctgaactctttcttatctttggattagga |
165 |
Q |
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| T |
26375888 |
attccgcatactcaagagattggttaagacctgtctctaatgtttttcttatcattggatcagga |
26375824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 78 - 173
Target Start/End: Complemental strand, 34327849 - 34327754
Alignment:
| Q |
78 |
aaatactgtatggtttgcttctgattctgcagattcaagagattggttaagacctatctctgaactctttcttatctttggattaggaatgtcact |
173 |
Q |
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| T |
34327849 |
aaatactgtatggtttgcttctgaatctacatattcaaaaggttgattaaaacctatctgtgaactctatcttttctttggatcaagaatgtcact |
34327754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 85 - 173
Target Start/End: Complemental strand, 34322380 - 34322293
Alignment:
| Q |
85 |
gtatggtttgcttctgattctgcagattcaagagattggttaagacctatctctgaactctttcttatctttggattaggaatgtcact |
173 |
Q |
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| T |
34322380 |
gtatggtttgcttctgaatctt-agattcaaaaggttgattaagacctatctgcgaactctttcttatcttcggatcaacaatgtcact |
34322293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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